Structure of PDB 6qid Chain A Binding Site BS02

Receptor Information
>6qid Chain A (length=703) Species: 759272 (Thermochaetoides thermophila DSM 1495) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GTTAKQAEAVEDSDINPWTGQRHSERYFKILKARRKLPVNKQRQEFLDLY
HNNQILVFVGETGSGKTTQIPQYVLYDELPHQTGKLIACTQPRRVAAMSV
AQRVADELDVKLGEEVGYSIRFENKTSSKTLLKYMTDGQLLREAMHDRDM
SRYSCIILDEAHERTLATDILMALLKQLSERRKDLKIIVMSATLDAQKFQ
SYFFNAPLLAVPGRTHPVEIFYTPEAERDYVEAAIRTVLQIHACEPEGDI
LLFLTGEEEIEDACRRISLEVDEMIRESDAGPMSVYPLYGTLPPHQQQRI
FEKAPQPFRPGGRPGRKCIVATNIAETALTIDGIVYVVDPGFSKQKIYNP
RTRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFKKELIEQTY
PEILRSNLSNTVLELKKLGVEDLVHFDLMDPPAPETMMRALEELNYLACL
DDDGELTPLGNLASEFPLDPALAVMLISSPEFYCSNEILSITSLLSVPQI
WVRPANARKRADEMKAQFAHPDGDHLTLLNAYHAYKGAEARGEDMKKWCH
EHFLSYRHLSSADNVRAQLKKIMETHGIELVSTPFHDKNYYTNIRRALLA
GFFMQVAMRESSNSKVYKTVKDEQLVLIHPSTTVTTPYEWVVYNEFVLTT
KQYVRTVTNIRPEWLLEIAPVYYDLSTFQKGEIKNALTRVAEKIRRQQAM
KAS
Ligand information
Ligand IDBEF
InChIInChI=1S/Be.3FH/h;3*1H/q+2;;;/p-3
InChIKeyOGIAHMCCNXDTIE-UHFFFAOYSA-K
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0[Be-](F)(F)F
ACDLabs 10.04
CACTVS 3.341		F[Be-](F)F
FormulaBe F3
NameBERYLLIUM TRIFLUORIDE ION
ChEMBL
DrugBank
ZINC
PDB chain6qid Chain A Residue 1323 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6qid Structural basis for RNA translocation by DEAH-box ATPases.
Resolution2.204 Å
Binding residue
(original residue number in PDB)		T121 K125 E219 R432 R435
Binding residue
(residue number reindexed from 1)		T62 K66 E160 R373 R376
Annotation score1
Enzymatic activity
Enzyme Commision number 3.6.4.13: RNA helicase.
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0003724 RNA helicase activity
GO:0004386 helicase activity
GO:0005524 ATP binding
GO:0016787 hydrolase activity
GO:0046872 metal ion binding
Cellular Component
GO:0005681 spliceosomal complex
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:6qid, PDBe:6qid, PDBj:6qid
PDBsum6qid
PubMed30828714
UniProtG0RY84

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