Structure of PDB 6ppu Chain A Binding Site BS02

Receptor Information
>6ppu Chain A (length=601) Species: 1772 (Mycolicibacterium smegmatis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTVTVRLAASTH
AEGTMIADALRRAHLVDGIPWSQMAVIVRSVLTAAGVPVQPVGRQPAAAA
LLTVLDVTATGHLDADSAVALLTPIGRVDPVTLRQLRRALRRADGSQPPR
DFGDLLVDAIEREPKAEHARTLRRLRAVLTAARRSDPRYTLWQAWHASRR
WLAASERGGSVGAQADRDLDAVTTLFDVADQYVLRGLVDHVTRAEAVAVL
SVHWDFVVIAGVQEGLWPNQHLVDVVAEERRLLRVMITAVDSAAAAAAAA
AAAAAPPLVAPRVLAPSALVGRLRAVVCAPRACAAAQLARLAAAGVPGAD
PSQWHAMTSLTTEEPLWSEPHVVTLSPSTLQMLTDCPLRWLLERHGGDDG
RDVRSTVGSLVHALVSEPGKTESQLVNELEKVWDDLPYDAKWYSDNELAR
HRAMLETFTRWREDTRLTEVATEIPVEGIVVEPGVRVRGRLDRLERDEAG
RLVVVDLKTGKSPVTKDDAQNHAQLAMYQLAVAAGLEPGGGKLVYLGKAT
EREQDPLTPDKRAEWLETVGEAAAATAGPRFVARVNNGCANCPVRSSCPA
Q
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain6ppu Chain A Residue 1101 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6ppu Structures and single-molecule analysis of bacterial motor nuclease AdnAB illuminate the mechanism of DNA double-strand break resection.
Resolution3.5 Å
Binding residue
(original residue number in PDB)
H833 D920 L935
Binding residue
(residue number reindexed from 1)
H412 D492 L507
Annotation score1
Enzymatic activity
Enzyme Commision number 5.6.2.4: DNA 3'-5' helicase.
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003678 DNA helicase activity
GO:0005524 ATP binding
GO:0016787 hydrolase activity

View graph for
Molecular Function
External links
PDB RCSB:6ppu, PDBe:6ppu, PDBj:6ppu
PDBsum6ppu
PubMed31740608
UniProtA0QTR9

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