Structure of PDB 6pbd Chain A Binding Site BS02

Receptor Information
>6pbd Chain A (length=350) Species: 155892 (Caulobacter vibrioides) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKFGPETIIHGDCIEQMNALPEKSVDLIFADPPYNLQLGGDLLRPDNSKV
DAVDDHWDQFESFAAYDKFTREWLKAARRVLKDDGAIWVIGSYHNIFRVG
VAVQDLGFWILNDIVWRKSNPMPNFKGTRFANAHETLIWASKSQNAKRYT
FNYDALKMANDEVQMRSDWTIPLCTGEERIKGADGQKAHPTQKPEALLYR
VILSTTKPGDVILDPFFGVGTTGAAAKRLGRKFIGIEREAEYLEHAKARI
AKVVPIAPEDRAEPRVPFGTIVEAGLLSPGDTLYCSKGTHVAKVRPDGSI
TVGDLSGSIHKIGALVQSAPACNGWTYWHFKTDAGLAPIDVLRAQVRAGM
Ligand information
Receptor-Ligand Complex Structure
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PDB6pbd The cell cycle-regulated DNA adenine methyltransferase CcrM opens a bubble at its DNA recognition site.
Resolution2.343 Å
Binding residue
(original residue number in PDB)		P45 P123 N124 F125 K126
Binding residue
(residue number reindexed from 1)		P45 P123 N124 F125 K126
Enzymatic activity
Enzyme Commision number 2.1.1.72: site-specific DNA-methyltransferase (adenine-specific).
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0008168 methyltransferase activity
GO:0008170 N-methyltransferase activity
GO:0009007 site-specific DNA-methyltransferase (adenine-specific) activity
Biological Process
GO:0006260 DNA replication
GO:0032259 methylation
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6pbd, PDBe:6pbd, PDBj:6pbd
PDBsum6pbd
PubMed31601797
UniProtP0CAW2|CCRM_CAUVC DNA methyltransferase CcrM (Gene Name=ccrMIM)

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