Structure of PDB 6ojt Chain A Binding Site BS02

Receptor Information
>6ojt Chain A (length=481) Species: 13689 (Sphingomonas paucimobilis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AHFPQTPGFSGTLRPLRIEGDILDIEIEGEVPPQLNGTFHRVHPDAQFPP
RFEDDQFFNGDGMVSLFRFHDGKIDFRQRYAQTDKWKVERKAGKSLFGAY
RNPLTDDASVQGMIRGTANTNVMVHAGKLYAMKEDSPCLIMDPLTLETEG
YTNFDGKLQSQTFCAHPKIDPVTGNLCAFAYGAKGLMTLDMAYIEISPTG
KLLKEIPFQNPYYCMMHDFGVTEDYAVFAVMPLLSSWDRLEQRLPFFGFD
TTLPCYLGILPRNGDARDLRWFKTGNCFVGHVMNAFNDGTKVHIDMPVSR
NNSFPFFDVHGAPFDPVAGQGFLTRWTVDMASNGDSFEKTERLFDRPDEF
PRIDERYATRAYRHGWMLILDTEKPYEAPGGAFYALTNTLGHIDLATGKS
SSWWAGPRCAIQEPCFIPRSPDAPEGDGYVIALVDDHVANYSDLAIFDAQ
HVDQGPIARAKLPVRIRQGLHGNWADASRLA
Ligand information
Ligand IDFE
InChIInChI=1S/Fe/q+3
InChIKeyVTLYFUHAOXGGBS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
CACTVS 3.341
OpenEye OEToolkits 1.5.0		[Fe+3]
FormulaFe
NameFE (III) ION
ChEMBL
DrugBankDB13949
ZINC
PDB chain6ojt Chain A Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6ojt Identification of functionally important residues and structural features in a bacterial lignostilbene dioxygenase.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		H167 H218 H282 H472
Binding residue
(residue number reindexed from 1)		H166 H217 H281 H471
Annotation score1
Enzymatic activity
Enzyme Commision number 1.13.11.43: lignostilbene alphabeta-dioxygenase.
Gene Ontology
Molecular Function
GO:0005506 iron ion binding
GO:0010436 carotenoid dioxygenase activity
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872 metal ion binding
GO:0050054 lignostilbene alpha beta-dioxygenase activity
GO:0051213 dioxygenase activity
Biological Process
GO:0016121 carotene catabolic process
GO:0046274 lignin catabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6ojt, PDBe:6ojt, PDBj:6ojt
PDBsum6ojt
PubMed31292192
UniProtQ53353|LSDX1_SPHPI Lignostilbene-alpha,beta-dioxygenase isozyme I

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