Structure of PDB 6ojr Chain A Binding Site BS02

Receptor Information
>6ojr Chain A (length=478) Species: 13689 (Sphingomonas paucimobilis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AHFPQTPGFSGTLRPLRIEGDILDIEIEGEVPPQLNGTFHRVHPDAQFPP
RFEDDQFFNGDGMVSLFRFHDGKIDFRQRYAQTDKWKVERKAGKSLFGAY
RNPLTDDASVQGMIRGTANTNVMVHAGKLYAMKEDSPCLIMDPLTLETEG
YTNFDGKLQSQTFCAHPKIDPVTGNLCAFAYGAKGLMTLDMAYIEISPTG
KLLKEIPFQNPYYCMMHDFGVTEDYAVFAVMPLLSSWDRLEQRLPFFGFD
TTLPCYLGILPRNGDARDLRWFKTGNCFVGHVMNAFNDGTKVHIDMPVSR
NNSFPFFDVHGAPFDPVAGQGFLTRWTVDMASNGDSFEKTERLFDRPDEF
PRIDERYATRAYRHGWMLILDTEKPYEAPYALTNTLGHIDLATGKSSSWW
AGPRCAIQEPCFIPRSPDAPEGDGYVIALVDDHVANYSDLAIFDAQHVDQ
GPIARAKLPVRIRQGLHGNWADASRLAA
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain6ojr Chain A Residue 505 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6ojr Identification of functionally important residues and structural features in a bacterial lignostilbene dioxygenase.
Resolution2.3 Å
Binding residue
(original residue number in PDB)		R353 I354 E356
Binding residue
(residue number reindexed from 1)		R352 I353 E355
Annotation score1
Enzymatic activity
Enzyme Commision number 1.13.11.43: lignostilbene alphabeta-dioxygenase.
Gene Ontology
Molecular Function
GO:0005506 iron ion binding
GO:0010436 carotenoid dioxygenase activity
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872 metal ion binding
GO:0050054 lignostilbene alpha beta-dioxygenase activity
GO:0051213 dioxygenase activity
Biological Process
GO:0016121 carotene catabolic process
GO:0046274 lignin catabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6ojr, PDBe:6ojr, PDBj:6ojr
PDBsum6ojr
PubMed31292192
UniProtQ53353|LSDX1_SPHPI Lignostilbene-alpha,beta-dioxygenase isozyme I

[Back to BioLiP]