Structure of PDB 6ojk Chain A Binding Site BS02

Receptor Information

>6ojk Chain A (length=542) Species: 630 (Yersinia enterocolitica)

DRLTVVKQYVDNVLNKASDTYHGDKPSPLLADGVDPRTGQQLEWIFPDGR
RAVLSNFSAQQNLMRVMSGLSQLSGDPRYQKRAEDIVRYHFQNYQDPSGL
LYWGGHRFVDLKTLQPEGPSEKERVHELKNAYPYYDLMFSVDSDATARFI
RGFWNAHVYDWRILETSRHGEYGKPMGALWESKFEQQPPFFATKGLSFLN
AGNDLIYSASLLYQHQQDQGALTWAKRLADQYVLPRDAKTGLGVYQFTQA
LKREEPTDDADTHSWFGDRAQRQFGPEFGPAALEGNMMLKGRTSTLYSEN
ALMQLQLGKDLGPQGQDLLKWTVDGLKAFAKYAYNDQDNTFRPMIANGQD
LSNYTLPRDGYYGKKGTVLKPYKAGNEFLISYARAYAIDNDPLLWKVARG
IANDQGLGDIGTAPGKEVKVNMDTTNSDPYALFALLDLYHASQVADYRKL
AEKIGDNIIKTRYIDGFFMASPDRQYADVDAIEPYALLALEASLRNKPQA
VAPFLNGAGFTEGAYRMDDGSARVSTRDNELFLLNVGEKLQP

Ligand information

• Ligand ID: ADA
• InChI: InChI=1S/C6H10O7/c7-1-2(8)4(5(10)11)13-6(12)3(1)9/h1-4,6-9,12H,(H,10,11)/t1-,2+,3+,4-,6-/m0/s1
• InChIKey: AEMOLEFTQBMNLQ-BKBMJHBISA-N
• SMILES:
  OpenEye OEToolkits 1.5.0: C1(C(C(OC(C1O)O)C(=O)O)O)O
  CACTVS 3.341: O[CH]1O[CH]([CH](O)[CH](O)[CH]1O)C(O)=O
  CACTVS 3.341: O[C@H]1O[C@@H]([C@H](O)[C@H](O)[C@H]1O)C(O)=O
  ACDLabs 10.04: O=C(O)C1OC(O)C(O)C(O)C1O
  OpenEye OEToolkits 1.5.0: [C@@H]1([C@H]([C@H](O[C@@H]([C@@H]1O)O)C(=O)O)O)O
• Formula: C6 H10 O7
• Name: alpha-D-galactopyranuronic acid;
  alpha-D-galacturonic acid;
  D-galacturonic acid;
  galacturonic acid;
  ALPHA D-GALACTURONIC ACID
• DrugBank: DB03511
• ZINC: ZINC000004228259
• PDB chain: 6ojk Chain B Residue 2

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6ojk A surrogate structural platform informed by ancestral reconstruction and resurrection of a putative carbohydrate binding module hybrid illuminates the neofunctionalization of a pectate lyase.
• Resolution: 1.5 Å
• Binding residue (original residue number in PDB): K155 R194 F224 R295 Y387
• Binding residue (residue number reindexed from 1): K129 R168 F198 R269 Y361
• Annotation score: 4

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sat Nov 16 15:01:07 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6ojk', asym_id = 'A', bs = 'BS02', title = 'A surrogate structural platform informed by ance...tes the neofunctionalization of a pectate lyase. '

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6ojk', asym_id='A', bs='BS02', title='A surrogate structural platform informed by ance...tes the neofunctionalization of a pectate lyase. ')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0016837,0042597,0045490', uniprot = '', pdbid = '6ojk', asym_id = 'A'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0016837,0042597,0045490', uniprot='', pdbid='6ojk', asym_id='A')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>