Structure of PDB 6o1y Chain A Binding Site BS02

Receptor Information

>6o1y Chain A (length=353) Species: 1502 (Clostridium perfringens)

DKRNAEYRLAFEQLNFVGADSKTPILKSFIEDKGTRIDEITFESMIPIET
WKSYIPQLQTSLNISIISIEQGASKRIVIIKSMAGDAKIPKYLPWDDKYI
EEQEGVVVVGQTFSGNIKIDLNKSPHILSAGETGSGKSVILRCILWQLLK
QGAIAYMVDFKGGVEFGLEYEKVGQVITEVDAAEKLFKYLVDENAKRLKL
LRESGSKNIGEYNKKFEGEELKRIIVVIDELAELMDKTGVDDETRAKLVR
IEGYTSTLARLSRATGINLCIGVQRPDAKVITGQIKNNVPVRICGRFADS
KASEIVLSNTKAKDLPEVKGRFLFKLGADTVQFQAFYFDDDKHFIPNKIL
KLR

Ligand information

• Ligand ID: BGC
• InChI: InChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5-,6-/m1/s1
• InChIKey: WQZGKKKJIJFFOK-VFUOTHLCSA-N
• SMILES:
  OpenEye OEToolkits 1.7.6: C(C1C(C(C(C(O1)O)O)O)O)O
  CACTVS 3.370: OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1O
  CACTVS 3.370: OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
  OpenEye OEToolkits 1.7.6: C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O)O
  ACDLabs 12.01: OC1C(O)C(OC(O)C1O)CO
• Formula: C6 H12 O6
• Name: beta-D-glucopyranose;
  beta-D-glucose;
  D-glucose;
  glucose
• ChEMBL: CHEMBL1614854
• DrugBank: DB02379
• ZINC: ZINC000003833800
• PDB chain: 6o1y Chain A Residue 502

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6o1y Structure of pCW3 conjugation coupling protein TcpA
• Resolution: 2.7 Å
• Binding residue (original residue number in PDB): Y261 Q280
• Binding residue (residue number reindexed from 1): Y156 Q175
• Annotation score: 4

Gene Ontology

Molecular Function

• GO:0000166 nucleotide binding
• GO:0003677 DNA binding
• GO:0005524 ATP binding

External links

• PDB: RCSB:6o1y, PDBe:6o1y, PDBj:6o1y
• PDBsum: 6o1y
• UniProt: Q1PLI0