Structure of PDB 6nqh Chain A Binding Site BS02

Receptor Information
>6nqh Chain A (length=448) Species: 190486 (Xanthomonas citri pv. citri str. 306) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MTLPAFKAYDIRGRVPDELNEDLARRIGVALAAQLDQGPVVLGHDVRLAS
PALQEALSAGLRASGRDVIDIGLCGTEEVYFQTDYLKAAGGVMVTASHNP
MDYNGMKLVREQARPISSDTGLFAIRDTVAADTAAPGEPTASEQSRTDKT
AYLEHLLSYVDRSTLKPLKLVVNAGNGGAGLIVDLLAPHLPFEFVRVFHE
PDGNFPNGIPNPLLPENRDATAKAVKDNGADFGIAWDGDFDRCFFFDHTG
RFIEGYYLVGLLAQAILAKQPGGKVVHDPRLTWNTVEQVEEAGGIPVLCK
SGHAFIKEKMRSENAVYGGEMSAHHYFREFAYADSGMIPWLLIAELVSQS
GRSLADLVEARMQKFPCSGEINFKVADAKASVARVMEHYASLSPELDYTD
GISADFGQWRFNLRSSNTEPLLRLNVETRGDAALLETRTQEISNLLRG
Ligand information
Ligand IDX1P
InChIInChI=1S/C5H11O8P/c6-2-1-12-5(4(8)3(2)7)13-14(9,10)11/h2-8H,1H2,(H2,9,10,11)/t2-,3+,4-,5-/m1/s1
InChIKeyILXHFXFPPZGENN-KKQCNMDGSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C1[C@H]([C@@H]([C@H]([C@H](O1)OP(=O)(O)O)O)O)O
CACTVS 3.341O[CH]1CO[CH](O[P](O)(O)=O)[CH](O)[CH]1O
OpenEye OEToolkits 1.5.0C1C(C(C(C(O1)OP(=O)(O)O)O)O)O
CACTVS 3.341O[C@@H]1CO[C@H](O[P](O)(O)=O)[C@H](O)[C@H]1O
ACDLabs 10.04O=P(OC1OCC(O)C(O)C1O)(O)O
FormulaC5 H11 O8 P
Name1-O-phosphono-alpha-D-xylopyranose;
1-O-phosphono-alpha-D-xylose;
1-O-phosphono-D-xylose;
1-O-phosphono-xylose
ChEMBLCHEMBL1236752
DrugBank
ZINC
PDB chain6nqh Chain A Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6nqh Substate dynamics of the XcPGM reaction mechanism
Resolution1.45 Å
Binding residue
(original residue number in PDB)		R280 S301 G302 E320 S322 R414 S416 N417 T418 R423
Binding residue
(residue number reindexed from 1)		R280 S301 G302 E320 S322 R414 S416 N417 T418 R423
Annotation score1
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Mon Feb 17 01:50:08 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6nqh', asym_id = 'A', bs = 'BS02', title = 'Substate dynamics of the XcPGM reaction mechanism'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6nqh', asym_id='A', bs='BS02', title='Substate dynamics of the XcPGM reaction mechanism')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0000287,0005975,0016868', uniprot = '', pdbid = '6nqh', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0000287,0005975,0016868', uniprot='', pdbid='6nqh', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>