Structure of PDB 6npx Chain A Binding Site BS02

Receptor Information

>6npx Chain A (length=448) Species: 190486 (Xanthomonas citri pv. citri str. 306)

MTLPAFKAYDIRGRVPDELNEDLARRIGVALAAQLDQGPVVLGHDVRLAS
PALQEALSAGLRASGRDVIDIGLCGTEEVYFQTDYLKAAGGVMVTASHNP
MDYNGMKLVREQARPISSDTGLFAIRDTVAADTAAPGEPTASEQSRTDKT
AYLEHLLSYVDRSTLKPLKLVVNAGNGGAGLIVDLLAPHLPFEFVRVFHE
PDGNFPNGIPNPLLPENRDATAKAVKDNGADFGIAWDGDFDRCFFFDHTG
RFIEGYYLVGLLAQAILAKQPGGKVVHDPRLTWNTVEQVEEAGGIPVLCK
SGHAFIKEKMRSENAVYGGEMSAHHYFREFAYADSGMIPWLLIAELVSQS
GRSLADLVEARMQKFPCSGEINFKVADAKASVARVMEHYASLSPELDYTD
GISADFGQWRFNLRSSNTEPLLRLNVETRGDAALLETRTQEISNLLRG

Ligand information

• Ligand ID: M6P
• InChI: InChI=1S/C6H13O9P/c7-3-2(1-14-16(11,12)13)15-6(10)5(9)4(3)8/h2-10H,1H2,(H2,11,12,13)/t2-,3-,4+,5+,6+/m1/s1
• InChIKey: NBSCHQHZLSJFNQ-PQMKYFCFSA-N
• SMILES:
  CACTVS 3.341: O[CH]1O[CH](CO[P](O)(O)=O)[CH](O)[CH](O)[CH]1O
  CACTVS 3.341: O[C@H]1O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H](O)[C@@H]1O
  OpenEye OEToolkits 1.5.0: C([C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)O)O)O)O)OP(=O)(O)O
  OpenEye OEToolkits 1.5.0: C(C1C(C(C(C(O1)O)O)O)O)OP(=O)(O)O
  ACDLabs 10.04: O=P(O)(O)OCC1OC(O)C(O)C(O)C1O
• Formula: C6 H13 O9 P
• Name: 6-O-phosphono-alpha-D-mannopyranose;
  ALPHA-D-MANNOSE-6-PHOSPHATE;
  6-O-phosphono-alpha-D-mannose;
  6-O-phosphono-D-mannose;
  6-O-phosphono-mannose
• ChEMBL: CHEMBL402001
• DrugBank: DB02900
• ZINC: ZINC000004096188
• PDB chain: 6npx Chain A Residue 503

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6npx Structural and dynamical description of the enzymatic reaction of a phosphohexomutase.
• Resolution: 1.42 Å
• Binding residue (original residue number in PDB): R280 G302 H303 E320 S322 H324 R414 S416 N417 T418 R423
• Binding residue (residue number reindexed from 1): R280 G302 H303 E320 S322 H324 R414 S416 N417 T418 R423
• Annotation score: 4

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sat Nov 16 12:27:45 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6npx', asym_id = 'A', bs = 'BS02', title = 'Structural and dynamical description of the enzymatic reaction of a phosphohexomutase.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6npx', asym_id='A', bs='BS02', title='Structural and dynamical description of the enzymatic reaction of a phosphohexomutase.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0000287,0005975,0016868', uniprot = '', pdbid = '6npx', asym_id = 'A'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0000287,0005975,0016868', uniprot='', pdbid='6npx', asym_id='A')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>