Structure of PDB 6nej Chain A Binding Site BS02

Receptor Information
>6nej Chain A (length=343) Species: 150095 (Thalictrum flavum subsp. glaucum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VNYLSGLGLSRLICLPMALRAAIELNVFEIIFQAGPAQLSPAEIVAKIPT
KNPNAAIALDRILRMLGASSILSVTTMKDGRVYGLTEESRCLVADKNGVS
VVPMLLFTSDKAVVESFYNIKDVVLEEGVIPFDRTHGMDFFAYAGKEQSV
NKSFNQAMGAGSTIAFDEVFKVYKGFHDLKELVNVGGGIGTSLSNIIFKY
PHIKGINFELPHVIADAPNYPGVEHIAGNMFEGVPNAQNILLKWVLHDWD
DERSIKILQNCWKALPEGGTVIVVEFVLPQLGNNAESFNALTPDLLMMTL
NPGGKERTTTEFDGLAKAAGFAETKFFPISQGLHVMEFHKATA
Ligand information
Ligand IDSAH
InChIInChI=1S/C14H20N6O5S/c15-6(14(23)24)1-2-26-3-7-9(21)10(22)13(25-7)20-5-19-8-11(16)17-4-18-12(8)20/h4-7,9-10,13,21-22H,1-3,15H2,(H,23,24)(H2,16,17,18)/t6-,7+,9+,10+,13+/m0/s1
InChIKeyZJUKTBDSGOFHSH-WFMPWKQPSA-N
SMILES
SoftwareSMILES
CACTVS 3.341N[CH](CCSC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)C(O)=O
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CSCCC(C(=O)O)N)O)O)N
CACTVS 3.341N[C@@H](CCSC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)C(O)=O
ACDLabs 10.04O=C(O)C(N)CCSCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CSCC[C@@H](C(=O)O)N)O)O)N
FormulaC14 H20 N6 O5 S
NameS-ADENOSYL-L-HOMOCYSTEINE
ChEMBLCHEMBL418052
DrugBankDB01752
ZINCZINC000004228232
PDB chain6nej Chain A Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6nej Structural and functional characterization of the scoulerine 9-O methyltransferase from Thalictrum flavum.
Resolution1.6 Å
Binding residue
(original residue number in PDB)		F148 M165 S169 G193 E216 L217 N236 M237 K250 W251
Binding residue
(residue number reindexed from 1)		F141 M158 S162 G186 E209 L210 N229 M230 K243 W244
Annotation score5
Enzymatic activity
Enzyme Commision number 2.1.1.117: (S)-scoulerine 9-O-methyltransferase.
Gene Ontology
Molecular Function
GO:0008168 methyltransferase activity
GO:0008171 O-methyltransferase activity
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity
GO:0030777 (S)-scoulerine 9-O-methyltransferase activity
GO:0046983 protein dimerization activity
Biological Process
GO:0032259 methylation

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6nej, PDBe:6nej, PDBj:6nej
PDBsum6nej
PubMed
UniProtQ5C9L2

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