Structure of PDB 6knk Chain A Binding Site BS02

Receptor Information
>6knk Chain A (length=383) Species: 158878 (Staphylococcus aureus subsp. aureus Mu50) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MRIVQPVIEQLKAQSHPVCHYIYDLVGLEHHLQHITSSLPSNCQMYYAMA
ANSERTILDTISQYVEGFEVASQGEIAKGLAFKPANHIIFGGPGKTDEEL
RYAVSEGVQRIHVESMHELQRLNAILEDEDKTQHILLRVNLARPTQFGIS
EDEVDDVIEAALVMPNIHLDGFHFHSISNNLDSNLHVDVVKLYFKKAKSW
SEKHRFPLKHINLGGGIGVNYADLTSQFEWDNFVENFKTLIVEQEMEDVT
LNFECGRFIVAHIGYYVTEVLDIKKVHGAWYAILRGGTQQFRLPVSWQHN
HPFEIYRYKDNPYSFEKVSISRQDTTLVGQLCTPKDVFAREVQIDAISTG
DVIVFKYAGAYGWSISHHDFLSHPHPEFIYLTQ
Ligand information
Ligand IDX3J
InChIInChI=1S/C8H14N2O6/c9-1-2-10-5(11)3-8(16,7(14)15)4-6(12)13/h16H,1-4,9H2,(H,10,11)(H,12,13)(H,14,15)/t8-/m0/s1
InChIKeyKQWWDTIPDRWKGZ-QMMMGPOBSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.6.1C(CNC(=O)C[C@](CC(=O)O)(C(=O)O)O)N
ACDLabs 10.04O=C(O)CC(O)(C(=O)O)CC(=O)NCCN
CACTVS 3.352NCCNC(=O)C[C](O)(CC(O)=O)C(O)=O
CACTVS 3.352NCCNC(=O)C[C@](O)(CC(O)=O)C(O)=O
OpenEye OEToolkits 1.6.1C(CNC(=O)CC(CC(=O)O)(C(=O)O)O)N
FormulaC8 H14 N2 O6
Name(2S)-2-{2-[(2-AMINOETHYL)AMINO]-2-OXOETHYL}-2-HYDROXYBUTANEDIOIC ACID;
5,6-DIHYDRO-BENZO[H]CINNOLIN-3-YLAMINE
ChEMBL
DrugBank
ZINCZINC000064744242
PDB chain6knk Chain B Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6knk Structural Insights into Substrate Recognition and Activity Regulation of the Key Decarboxylase SbnH in Staphyloferrin B Biosynthesis.
Resolution2.3 Å
Binding residue
(original residue number in PDB)
T345 K347
Binding residue
(residue number reindexed from 1)
T333 K335
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0008836 diaminopimelate decarboxylase activity
GO:0016830 carbon-carbon lyase activity
Biological Process
GO:0006596 polyamine biosynthetic process
GO:0009089 lysine biosynthetic process via diaminopimelate

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:6knk, PDBe:6knk, PDBj:6knk
PDBsum6knk
PubMed31634470
UniProtA0A0H3JPF2

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