Structure of PDB 6k5k Chain A Binding Site BS02

Receptor Information
>6k5k Chain A (length=287) Species: 763924 (Phytophthora capsici LT1534) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MPTHSDGTVLHLGLRAGQVANRIVSVGSLGRAKVLAQLLDEGHFETFESA
RGFTTYSGKVKGVPVSIVATGMGVPNMDFVVRETRAVVNGPMTIIRFGTC
GAVREEVPPGSVVVNGKGSIMVTRNPDAFFPGASEEDCYRVSRVMPSSST
LSKALVASMEDKLTALRAEPVIAASSDCDALRVFDGLNATACSFYSSQGR
LDSNFDDRNEKLVEDLTTAHPDLYTVEMETFHLLDLAQRSRGSIQATAAV
LVVANRLSGQIVESEVLEALESFWGGVVLQTIVSTPL
Ligand information
Ligand IDDUR
InChIInChI=1S/C9H12N2O5/c12-4-6-5(13)3-8(16-6)11-2-1-7(14)10-9(11)15/h1-2,5-6,8,12-13H,3-4H2,(H,10,14,15)/t5-,6+,8+/m0/s1
InChIKeyMXHRCPNRJAMMIM-SHYZEUOFSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=C1NC(=O)N(C=C1)C2OC(C(O)C2)CO
OpenEye OEToolkits 1.5.0C1C(C(OC1N2C=CC(=O)NC2=O)CO)O
CACTVS 3.341OC[CH]1O[CH](C[CH]1O)N2C=CC(=O)NC2=O
CACTVS 3.341OC[C@H]1O[C@H](C[C@@H]1O)N2C=CC(=O)NC2=O
OpenEye OEToolkits 1.5.0C1[C@@H]([C@H](O[C@H]1N2C=CC(=O)NC2=O)CO)O
FormulaC9 H12 N2 O5
Name2'-DEOXYURIDINE
ChEMBLCHEMBL353955
DrugBankDB02256
ZINCZINC000000155696
PDB chain6k5k Chain A Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6k5k Structural and catalytic analysis of two diverse uridine phosphorylases in Phytophthora capsici.
Resolution2.097 Å
Binding residue
(original residue number in PDB)		M80 T107 C108 G109 F202 Q206 R208 E235
Binding residue
(residue number reindexed from 1)		M72 T99 C100 G101 F194 Q198 R200 E227
Annotation score3
Enzymatic activity
Enzyme Commision number 2.4.2.3: uridine phosphorylase.
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0004850 uridine phosphorylase activity
GO:0016757 glycosyltransferase activity
GO:0047847 deoxyuridine phosphorylase activity
Biological Process
GO:0006218 uridine catabolic process
GO:0009116 nucleoside metabolic process
Cellular Component
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6k5k, PDBe:6k5k, PDBj:6k5k
PDBsum6k5k
PubMed32493959
UniProtA0A410UCT3

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