Structure of PDB 6jon Chain A Binding Site BS02

Receptor Information
>6jon Chain A (length=280) Species: 1230469 (Nitratiruptor phage NrS-1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HMIMEIPAIKALSRYAQWVIWKKERDTKIPYNPNNGKKASSTDPLAWGDI
DEAQAGLVRYGANGLGFVLTKSDPFVFIDLDHVLDENKRVKCEWARQLLK
EIKSYTEISPSGDGLHVVVSGKLPDYIKHKTKFDDGSALEVYESGRYMTI
TGEVFDGRDDIKELDLSILGEFAEHKILDDEAIIDLMKRKGQWPDAPKDG
DDWSSLDMSFANRLAFWCGKDIERMDRIFRQSPLMRQKWDRPTAGSTYGR
ITLKKACDFVDSVYDPALRNESDCPFEPYN
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain6jon Chain A Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6jon Crystal structures of phage NrS-1 N300-dNTPs-Mg2+complex provide molecular mechanisms for substrate specificity.
Resolution2.34 Å
Binding residue
(original residue number in PDB)		D78 D80
Binding residue
(residue number reindexed from 1)		D79 D81
Annotation score1
Enzymatic activity
Enzyme Commision number 2.7.7.-
2.7.7.7: DNA-directed DNA polymerase.
3.6.4.12: DNA helicase.
External links
PDB RCSB:6jon, PDBe:6jon, PDBj:6jon
PDBsum6jon
PubMed31176489
UniProtM5AAG8|POL_BPNNR DNA Primase-polymerase (Gene Name=28)

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