Structure of PDB 6imk Chain A Binding Site BS02

Receptor Information
>6imk Chain A (length=409) Species: 10497 (African swine fever virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SMLNQFPGQYSNNIFCFPPIESETKSGKKASWIICVQVVQHNTIIPITDE
MFSTDVKDAVAEIFTKFFVEEGAVRISKMTRVTEGKNLGKKNATTVVHQA
FKDALSKYNRHARQKRGNRGMIPPMLVKYFNIIPKTFFEEETDPIVQRKR
NGVRAVACQQGDGCILLYSRTEKEFLGLDNIKKELKQLYLFIDVRVYLDG
ELYLHRKPLQWIAGQANAKTDSSELHFYVFDCFWSDQLQMPSNKRQQLLT
NIFKQKEDLTFIHQVENFSVKNVDEALRLKAQFIKEGYEGAIVRNANGPY
EPGYNNYHSAHLAKLKPLLDAEFILVDYTQGKKGKDLGAILWVCELPNKK
RFVVTPKHLTYADRYALFQKLTPALFKKHLYGKELTVEYAELSPKTGIPL
QARAVGFRE
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6imk Structure of the error-prone DNA ligase of African swine fever virus identifies critical active site residues.
Resolution2.502 Å
Binding residue
(original residue number in PDB)		K85 N86 Q98 S105 R109 R112 R156 S171 T173 K175 L211 N219
Binding residue
(residue number reindexed from 1)		K86 N87 Q99 S106 R110 R113 R154 S169 T171 K173 L209 N217
Enzymatic activity
Enzyme Commision number 6.5.1.1: DNA ligase (ATP).
Gene Ontology
Molecular Function
GO:0003909 DNA ligase activity
GO:0003910 DNA ligase (ATP) activity
GO:0005524 ATP binding
GO:0016874 ligase activity
GO:0046872 metal ion binding
Biological Process
GO:0006260 DNA replication
GO:0006281 DNA repair
GO:0006310 DNA recombination
GO:0051301 cell division
Cellular Component
GO:0044423 virion component

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6imk, PDBe:6imk, PDBj:6imk
PDBsum6imk
PubMed30674878
UniProtP35970|DNLI_ASFB7 DNA ligase (Gene Name=LIG)

[Back to BioLiP]