Structure of PDB 6hzg Chain A Binding Site BS02

Receptor Information
>6hzg Chain A (length=694) Species: 732242 (Phocaeicola paurosaccharolyticus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PEVNVVMTGDMTTRLAFAGEQLKQALVEKGYEVNQTTDEKEIKRSIYLNL
LNDTTKKNKERFDISTKGKNTYVTGYDGNGIIYGCRELIDQLDQSGTMDF
KPVSDAPEMVLRGACIGLQKTTYLPGHAVYEYPYTPESFPWFYDKERWIK
YLDMMVENRMNSLYLWNGHPFASLVKLKDYPFALEVDEETFKKNEEMFSF
LTTEAEKRGIFVIQMFYNIIVSKPFADHYGIKTQDRNRPITPLISDYTRK
SVAAFIEKYPNVGLLVCLGEAIGTYEEDVEWFTKTIIPGIKDGLKVLGRT
DEPPVLVRAHDTDCKMVIDAALPLYKNLYTMHKYNGSSLTTYEPRGPWAK
IHKDLSSLGSVHISNVHILANLEPWRWSSPDFIQKSVKAMHSVHGANALH
IYPQANYWDWPYTADKLANGEREEQVYRDWAWYKAWGRYAWKADRNRLEE
IKYWDKQFGDFYGIPAEMADNIRIAYEESGEIAPKLLRRFGITEGNRQTL
LLGMFMSQFVNPYKYTIHYGFYESCGPGGEKLIEYVEKEWKKQPHVGELP
LDIINQVIEHGDKAVAAIDKVVSSAKKNSDELRRLQNDMHCYREYAYAFY
YKVKAAQHVLNYHWGKNMDELDKAVPLMEESLKHYTKLVDLTKDTYLFAN
SMQTAQRRIPIGGDDGNNKTWSEMLVHYKAELYNFKENIEMLKD
Ligand information
Ligand IDGTR
InChIInChI=1S/C6H10O7/c7-1-2(8)4(5(10)11)13-6(12)3(1)9/h1-4,6-9,12H,(H,10,11)/t1-,2+,3+,4-,6+/m0/s1
InChIKeyAEMOLEFTQBMNLQ-DTEWXJGMSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6[C@@H]1([C@H]([C@H](O[C@H]([C@@H]1O)O)C(=O)O)O)O
ACDLabs 12.01C1(C(C(C(C(C(=O)O)O1)O)O)O)O
CACTVS 3.385O[C@@H]1O[C@@H]([C@H](O)[C@H](O)[C@H]1O)C(O)=O
OpenEye OEToolkits 1.7.6C1(C(C(OC(C1O)O)C(=O)O)O)O
CACTVS 3.385O[CH]1O[CH]([CH](O)[CH](O)[CH]1O)C(O)=O
FormulaC6 H10 O7
Namebeta-D-galactopyranuronic acid;
beta-D-galacturonic acid;
D-galacturonic acid;
galacturonic acid
ChEMBL
DrugBankDB03652
ZINCZINC000004097542
PDB chain6hzg Chain A Residue 902 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6hzg Structural and functional analyses of glycoside hydrolase 138 enzymes targeting chain A galacturonic acid in the complex pectin rhamnogalacturonan II.
Resolution1.6 Å
Binding residue
(original residue number in PDB)		Y154 Y241 E294 R332 H334 K357 H391 N520
Binding residue
(residue number reindexed from 1)		Y130 Y217 E270 R308 H310 K333 H367 N496
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
Biological Process
GO:0005975 carbohydrate metabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6hzg, PDBe:6hzg, PDBj:6hzg
PDBsum6hzg
PubMed30877196
UniProtA0A4V8GZY5

[Back to BioLiP]