Structure of PDB 6euv Chain A Binding Site BS02

Receptor Information
>6euv Chain A (length=277) Species: 392809 (Influenza A virus (A/Victoria/3/1975(H3N2))) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NDDIDQSLIIAARNIVRRASVSADPLASLLEMCHSTQIGGTRMVDILRQN
PTEEQAVDICKAAMGLRISSSFSFGGFTFKRTSGSSIKREEEVLTGNLQT
LKIRVHEGYEEFTMVGKRATAILRKATRRLVQLIVSGRDEQSIAEAIIVA
MVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGI
EHIDNVMGMVGVLPDMTPSTEMSMRGIRVSKMGVSTERVVVSIDRFLRVR
DQRGNVLLSPEEVSETHGTERLTITYS
Ligand information
Ligand ID21G
InChIInChI=1S/C20H19F2N5O2/c21-11-5-12-13(7-24-17(12)23-6-11)18-25-8-14(22)19(27-18)26-16-10-3-1-9(2-4-10)15(16)20(28)29/h5-10,15-16H,1-4H2,(H,23,24)(H,28,29)(H,25,26,27)/t9-,10+,15-,16-/m0/s1
InChIKeyJGPXDNKSIXAZEQ-UIHHKEIPSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.9.2c1c(cnc2c1c(c[nH]2)c3ncc(c(n3)N[C@@H]4[C@H](C5CCC4CC5)C(=O)O)F)F
CACTVS 3.385OC(=O)[CH]1C2CCC(CC2)[CH]1Nc3nc(ncc3F)c4c[nH]c5ncc(F)cc45
OpenEye OEToolkits 1.9.2c1c(cnc2c1c(c[nH]2)c3ncc(c(n3)NC4C5CCC(C4C(=O)O)CC5)F)F
ACDLabs 12.01O=C(O)C5C1CCC(CC1)C5Nc2nc(ncc2F)c4c3cc(F)cnc3nc4
CACTVS 3.385OC(=O)[C@H]1C2CCC(CC2)[C@@H]1Nc3nc(ncc3F)c4c[nH]c5ncc(F)cc45
FormulaC20 H19 F2 N5 O2
Name(2S,3S)-3-[[5-fluoranyl-2-(5-fluoranyl-1H-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-4-yl]amino]bicyclo[2.2.2]octane-2-carboxylic acid;
3-[[5-fluoro-2-(5-fluoro-1H-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-4-yl]amino]bicyclo[2.2.2]octane-2-carboxylic acid;
VX787;
(2S,3S)-3-((5-fluoro-2-(5-fluoro-1H-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-4-yl)amino)bicyclo[2.2.2]octane-2-carboxylic acid
ChEMBL
DrugBank
ZINC
PDB chain6euv Chain A Residue 602 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6euv Capped RNA primer binding to influenza polymerase and implications for the mechanism of cap-binding inhibitors.
Resolution2.7 Å
Binding residue
(original residue number in PDB)
H285 R293 R299
Binding residue
(residue number reindexed from 1)
H34 R42 R48
Annotation score1
Binding affinityPDBbind-CN: -logKd/Ki=8.62,Kd=2.4nM
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:6euv, PDBe:6euv, PDBj:6euv
PDBsum6euv
PubMed29202182
UniProtP31345|PB2_I75A3 Polymerase basic protein 2 (Gene Name=PB2)

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