Structure of PDB 6eko Chain A Binding Site BS02

Receptor Information
>6eko Chain A (length=312) Species: 294 (Pseudomonas fluorescens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MQKYRLYEKDGSPVQDFNRFVKGWLDIEFGLKEHQPPKVFDTIRDKYNEA
IEAVVLSGVAPRTAHKAALSTLTELLFGHDLAKELSARLDIQPIGVGGFR
SAHSQAFAKNVGENFVNLMVYALACILKDNDDVLVDKGLPPHLKKALTLS
RECRIKDTLREIKIPIEGDLCVFSRSNHMNAIVISAATRLKEVFHIGTMW
ALFSDVAKDEYCLNKWGLKVESSESLKDTMYVFATADMINKDGARSQGCD
VERETPRNLIAMDASFFDYVFVSKMGIGHVSSDLSLKYGRESLFHELGCI
IDMIEQKFDILL
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6eko Unique mechanism of target recognition by PfoI restriction endonuclease of the CCGG-family.
Resolution2.284 Å
Binding residue
(original residue number in PDB)		H34 Q35 P37 K38 R88 I94 G97 G98 F99 R100 A102 Q105 A106 K109 N110 E192 H195 R253 R257 N258 L259
Binding residue
(residue number reindexed from 1)		H34 Q35 P37 K38 R88 I94 G97 G98 F99 R100 A102 Q105 A106 K109 N110 E192 H195 R253 R257 N258 L259
Enzymatic activity
Enzyme Commision number 3.1.21.4: type II site-specific deoxyribonuclease.
Gene Ontology
Molecular Function
GO:0009036 type II site-specific deoxyribonuclease activity
GO:0046872 metal ion binding
Biological Process
GO:0006259 DNA metabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6eko, PDBe:6eko, PDBj:6eko
PDBsum6eko
PubMed30445642
UniProtA0A452CST9

[Back to BioLiP]