Structure of PDB 6ek6 Chain A Binding Site BS02

Receptor Information

>6ek6 Chain A (length=451) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

MFLPPPECPVFEPSWEEFADPFAFIHKIRPIAEQTGICKVRPPPDWQPPF
ACDVDKLHFTPRIQRLNELEAQTRVRDYTLRTFGEMADAFKSDYFNMPVH
MVPTELVEKEFWRLVSTIEEDVTVEYGADIASFGSGFPVRDIKLSPEEEE
YLDSGWNLNNMPVMEQSVLAHITADICGMKLPWLYVGMCFSSFCWHIEDH
WSYSINYLHWGEPKTWYGVPGYAAEQLENVMKKLAPELFVSQPDLLHQLV
TIMNPNTLMTHEVPVYRTNQCAGEFVITFPRAYHSGFNQGFNFAEAVNFC
TVDWLPLGRQCVEHYRLLHRYCVFSHDEMICKMASKADVLDVVVASTVQK
DMAIMIEDEKALRETVRKLGVIDSERMDFELLPDDERQCVKCKTTCFMSA
ISCSCKPGLLVCLHHVKELCSCPPYKYKLRYRYTLDDLYPMMNALKLRAE
S

Ligand information

Ligand ID

InChI

InChI=1S/Mn/q+2

InChIKey

WAEMQWOKJMHJLA-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mn+2]
CACTVS 3.341	[Mn++]

Formula

Name

MANGANESE (II) ION

PDB chain

6ek6 Chain A Residue 802 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6ek6 Crystal structure of KDM5B in complex with S49195a.
Resolution	2.05 Å
Binding residue (original residue number in PDB)	L90 N91 L413 V414 T416 E419
Binding residue (residue number reindexed from 1)	L66 N67 L114 V115 T117 E120
Annotation score	1

Enzymatic activity

Enzyme Commision number

1.14.11.67: [histone H3]-trimethyl-L-lysine(4) demethylase.

External links

PDB	RCSB:6ek6, PDBe:6ek6, PDBj:6ek6
PDBsum	6ek6
PubMed
UniProt	Q9UGL1\|KDM5B_HUMAN Lysine-specific demethylase 5B (Gene Name=KDM5B)

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