Structure of PDB 5zlf Chain A Binding Site BS02

Receptor Information
>5zlf Chain A (length=293) Species: 83333 (Escherichia coli K-12) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NLEKINELTAQDMAGVNAAILEQLNSDVQLINQLGYYIVSGGGKRIRPMI
AVLAARAVGYEGNAHVTIAALIEFIHTATLLHDDVVDESDMRRGKATANA
AFGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQLM
NVNITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLG
TAFQLIDDLLDYNNVGDDLNEGKPTLPLLHQAQMIRTAIEQGNGRHLLEP
VLEAMEWTRQRAEEEADKAIAALQVLPDTPWREALIGLAHIAV
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain5zlf Chain A Residue 902 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5zlf Discovery of Lipophilic Bisphosphonates That Target Bacterial Cell Wall and Quinone Biosynthesis.
Resolution2.845 Å
Binding residue
(original residue number in PDB)		D84 D88
Binding residue
(residue number reindexed from 1)		D83 D87
Annotation score1
Enzymatic activity
Enzyme Commision number 2.5.1.90: all-trans-octaprenyl-diphosphate synthase.
Gene Ontology
Molecular Function
GO:0004659 prenyltransferase activity
GO:0005515 protein binding
GO:0016740 transferase activity
GO:0042802 identical protein binding
GO:0042803 protein homodimerization activity
GO:0046872 metal ion binding
GO:0106350 octaprenyl pyrophosphate synthase activity
Biological Process
GO:0006744 ubiquinone biosynthetic process
GO:0008299 isoprenoid biosynthetic process
GO:0016094 polyprenol biosynthetic process
Cellular Component
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5zlf, PDBe:5zlf, PDBj:5zlf
PDBsum5zlf
PubMed30730737
UniProtP0AD57|ISPB_ECOLI Octaprenyl diphosphate synthase (Gene Name=ispB)

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