Structure of PDB 5yu3 Chain A Binding Site BS02
Receptor Information
>5yu3 Chain A (length=344) Species:
38300
(Streptomyces pristinaespiralis) [
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METWVLGRRDVAEVVAAVGRDELMRRIIDRLTGGLAEIGRGERHLSPLRG
GLERSEPVPGIWEWMPHREPGDHITLKTVGYSPANPARFGLPTILGTVAR
YDDTTGALTALMDGVLLTALRTGAASAVASRLLARPDSHTLGLIGTGAQA
VTQLHALSLVLPLQRALVWDTDPAHRESFARRAAFTGVSVEIAEPARIAA
EADVISTATSVAVGQGPVLPDTGVREHLHINAVGADLVGKTELPLGLLER
AFVTADHPEQALREGECQQLSADRLGPQLAHLCADPAAAAGRQDTLSVFD
STGFAFEDALAMEVFLEAAAERDLGIRVGIEHHPGDALDPYALQ
Ligand information
Ligand ID
PRO
InChI
InChI=1S/C5H9NO2/c7-5(8)4-2-1-3-6-4/h4,6H,1-3H2,(H,7,8)/t4-/m0/s1
InChIKey
ONIBWKKTOPOVIA-BYPYZUCNSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
C1C[C@H](NC1)C(=O)O
CACTVS 3.341
OC(=O)[C@@H]1CCCN1
CACTVS 3.341
OC(=O)[CH]1CCCN1
OpenEye OEToolkits 1.5.0
C1CC(NC1)C(=O)O
ACDLabs 10.04
O=C(O)C1NCCC1
Formula
C5 H9 N O2
Name
PROLINE
ChEMBL
CHEMBL54922
DrugBank
DB00172
ZINC
ZINC000000895360
PDB chain
5yu3 Chain A Residue 403 [
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Receptor-Ligand Complex Structure
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PDB
5yu3
Structural Basis for Recognition of L-lysine, L-ornithine, and L-2,4-diamino Butyric Acid by Lysine Cyclodeaminase.
Resolution
1.79 Å
Binding residue
(original residue number in PDB)
M65 K77 R121
Binding residue
(residue number reindexed from 1)
M65 K77 R121
Annotation score
5
Enzymatic activity
Enzyme Commision number
4.3.1.12
: ornithine cyclodeaminase.
Gene Ontology
Molecular Function
GO:0000166
nucleotide binding
GO:0008473
ornithine cyclodeaminase activity
GO:0016829
lyase activity
Cellular Component
GO:0005737
cytoplasm
View graph for
Molecular Function
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Cellular Component
External links
PDB
RCSB:5yu3
,
PDBe:5yu3
,
PDBj:5yu3
PDBsum
5yu3
PubMed
29629557
UniProt
D9UBW0
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