Structure of PDB 5ygr Chain A Binding Site BS02

Receptor Information
>5ygr Chain A (length=375) Species: 90370 (Salmonella enterica subsp. enterica serovar Typhi) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QFNTRRKKYGTSLLNGNVGHEVLAFHKKLPNYAVTPLHNLAHLSQRLGLG
SIHIKDESWRFGLNAFKGLGGSYAVGKYLADKLQCDIALNTPEIKEKIKD
CVFVTATDGNHGRGVAWAAEQLGLKAVVYMPLIRAENIRHHGAECTITDL
NYDDAVRLAHRMAQTKGWVLLQDTAWTGYEEIPTWIMQGYMTLAVEAYEQ
LAETNSPLPTHLILQAGVGSFAGSVMGYFVEKMQENIPNIIVVEPHQANC
LYQSAVMDDGQPHCVTIMAGLACGEPNIISWPIIRDNTSCFISADDCLAA
KGMRISAAPRPGTDTPFISGESGAIGVGLLYELMNNMHYQDLANRLQLDA
SAHVLLISTEGDTSPDIYEDIVWNG
Ligand information
Ligand IDPO4
InChIInChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)/p-3
InChIKeyNBIIXXVUZAFLBC-UHFFFAOYSA-K
SMILES
SoftwareSMILES
CACTVS 3.341[O-][P]([O-])([O-])=O
ACDLabs 10.04[O-]P([O-])([O-])=O
OpenEye OEToolkits 1.5.0[O-]P(=O)([O-])[O-]
FormulaO4 P
NamePHOSPHATE ION
ChEMBL
DrugBankDB14523
ZINC
PDB chain5ygr Chain A Residue 505 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5ygr Comparative structural and enzymatic studies on Salmonella typhimurium diaminopropionate ammonia lyase reveal its unique features
Resolution2.5 Å
Binding residue
(original residue number in PDB)		H49 T341
Binding residue
(residue number reindexed from 1)		H38 T315
Annotation score1
Enzymatic activity
Enzyme Commision number 4.3.1.15: diaminopropionate ammonia-lyase.
Gene Ontology
Molecular Function
GO:0008838 diaminopropionate ammonia-lyase activity
GO:0016829 lyase activity
GO:0030170 pyridoxal phosphate binding

View graph for
Molecular Function
External links
PDB RCSB:5ygr, PDBe:5ygr, PDBj:5ygr
PDBsum5ygr
PubMed29294403
UniProtP40817|DPAL_SALTY Diaminopropionate ammonia-lyase (Gene Name=dpaL)

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