Structure of PDB 5y7f Chain A Binding Site BS02

Receptor Information

>5y7f Chain A (length=267) Species: 28565 (Thermomyces dupontii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

ADINIFSVASGHLYERMLNIMMVSVMKHTKHSVKFWFIEQFLSPSFKKFL
PHLAKEYGFSYEMVTYKWPHWLRGQREKQREIWGYKILFLDVLFPLSLDK
VIFVDADQIVRTDMYDLVQLDLEGAPYGFTPMCDSRKEMEGFRFWKQGYW
KSHLRGRPYHISALYVVDLNRFRALAAGDRLRGQYHTLLANLDQDLPNNM
QAMIPIKSLPQEWLWCETWCADEDLKTARTIDLCNNPLTKEPKLDRARRQ
VPEWTEYDNEIAELAVR

Ligand information

Ligand ID

InChI

InChI=1S/Ca/q+2

InChIKey

BHPQYMZQTOCNFJ-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Ca++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Ca+2]

Formula

Name

CALCIUM ION

PDB chain

5y7f Chain A Residue 2003 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5y7f Visualisation of a flexible modular structure of the ER folding-sensor enzyme UGGT.
Resolution	1.35 Å
Binding residue (original residue number in PDB)	D1294 D1296 D1427
Binding residue (residue number reindexed from 1)	D105 D107 D232
Annotation score	1

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0000166	nucleotide binding
GO:0003980	UDP-glucose:glycoprotein glucosyltransferase activity
GO:0046872	metal ion binding
GO:0051082	unfolded protein binding

	Biological Process
GO:0006486	protein glycosylation
GO:0018279	protein N-linked glycosylation via asparagine
GO:0043934	sporulation
GO:0097359	UDP-glucosylation

	Cellular Component
GO:0005783	endoplasmic reticulum

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Cellular Component

External links

PDB	RCSB:5y7f, PDBe:5y7f, PDBj:5y7f
PDBsum	5y7f
PubMed	28939828
UniProt	A0A2D0TCJ6

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