Structure of PDB 5xzu Chain A Binding Site BS02

Receptor Information

>5xzu Chain A (length=334) Species: 554688 (Bispora sp. MEY-1)

WGLNNAARADGKLWFGTAADIPGLEQDDRYYMKEYNNTHDFGGTTPANIM
KFMFTEPEQNVFNFTGAQEFLDIAFASHKLVRCHNLIWQSELPTWVTNPT
TNWTNETLSKVLQNHVYTLVSHFGDQCYSWDVVNEALSDDPAGSYQNNIW
FDTIGPEYVAMAFEYAEKAVKDHKLNVKLYYNDYNIEYPGPKSTAAQNIV
KELKARNIQIDGVGLESHFIAGETPSQATQITNMADFTSLDIDVAVTELD
VRLYLPPNATSEAQQVADYYATVAACAATERCIGITVWDFDDTYSWVPST
FAGQGYADLFFQPDGPNTPLVKKAAYDGCLQALQ

Ligand information

• Ligand ID: BGC
• InChI: InChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5-,6-/m1/s1
• InChIKey: WQZGKKKJIJFFOK-VFUOTHLCSA-N
• SMILES:
  OpenEye OEToolkits 1.7.6: C(C1C(C(C(C(O1)O)O)O)O)O
  CACTVS 3.370: OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1O
  CACTVS 3.370: OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
  OpenEye OEToolkits 1.7.6: C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O)O
  ACDLabs 12.01: OC1C(O)C(OC(O)C1O)CO
• Formula: C6 H12 O6
• Name: beta-D-glucopyranose;
  beta-D-glucose;
  D-glucose;
  glucose
• ChEMBL: CHEMBL1614854
• DrugBank: DB02379
• ZINC: ZINC000003833800
• PDB chain: 5xzu Chain C Residue 2

Receptor-Ligand Complex Structure

Structure summary

• PDB: 5xzu Insight into the functional roles of Glu175 in the hyperthermostable xylanase XYL10C-Delta N through structural analysis and site-saturation mutagenesis.
• Resolution: 1.7 Å
• Binding residue (original residue number in PDB): K52 H85 E136 E217 H219 E249 W297
• Binding residue (residue number reindexed from 1): K51 H84 E135 E216 H218 E248 W296
• Annotation score: 4

Enzymatic activity

• Enzyme Commision number: 3.2.1.8: endo-1,4-beta-xylanase.

Gene Ontology

Molecular Function

• GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Biological Process

• GO:0005975 carbohydrate metabolic process

External links

• PDB: RCSB:5xzu, PDBe:5xzu, PDBj:5xzu
• PDBsum: 5xzu
• PubMed: 29930705
• UniProt: D0QF43