Structure of PDB 5wki Chain A Binding Site BS02

Receptor Information
>5wki Chain A (length=267) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDSDSGTAIFLKPWSK
GNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGCELH
SAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMET
VRILLYETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSGRLQLVCHVSG
FYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVADGEAAGLS
CRVKHSSLEGQDIILYW
Ligand information
Ligand IDD3D
InChIInChI=1S/C40H77O10P/c1-3-5-7-9-11-13-15-17-18-20-22-24-26-28-30-32-40(44)50-38(36-49-51(45,46)48-34-37(42)33-41)35-47-39(43)31-29-27-25-23-21-19-16-14-12-10-8-6-4-2/h17-18,37-38,41-42H,3-16,19-36H2,1-2H3,(H,45,46)/b18-17+/t37-,38+/m1/s1
InChIKeyPAZGBAOHGQRCBP-UCZVXENKSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CCCCCCCCCCCCCCCC(=O)OC[CH](CO[P](O)(=O)OC[CH](O)CO)OC(=O)CCCCCCCC=CCCCCCCCC
CACTVS 3.385CCCCCCCCCCCCCCCC(=O)OC[C@@H](CO[P](O)(=O)OC[C@H](O)CO)OC(=O)CCCCCCC\C=C\CCCCCCCC
ACDLabs 12.01P(OCC(O)CO)(O)(OCC(COC(CCCCCCCCCCCCCCC)=O)OC(CCCCCCC\C=C\CCCCCCCC)=O)=O
OpenEye OEToolkits 2.0.6CCCCCCCCCCCCCCCC(=O)OCC(COP(=O)(O)OCC(CO)O)OC(=O)CCCCCCCC=CCCCCCCCC
OpenEye OEToolkits 2.0.6CCCCCCCCCCCCCCCC(=O)OC[C@@H](COP(=O)(O)OC[C@@H](CO)O)OC(=O)CCCCCCC/C=C/CCCCCCCC
FormulaC40 H77 O10 P
Name(19S,22R,25R)-22,25,26-trihydroxy-16,22-dioxo-17,21,23-trioxa-22lambda~5~-phosphahexacosan-19-yl (9E)-octadec-9-enoate
ChEMBL
DrugBank
ZINC
PDB chain5wki Chain D Residue 308 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5wki A molecular basis of human T cell receptor autoreactivity toward self-phospholipids.
Resolution2.75 Å
Binding residue
(original residue number in PDB)
I69 V72 Y73 G76 F77 G153 M155 T157 V158 L161 Y169
Binding residue
(residue number reindexed from 1)
I64 V67 Y68 G71 F72 G146 M148 T150 V151 L154 Y162
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:5wki, PDBe:5wki, PDBj:5wki
PDBsum5wki
PubMed29054999
UniProtP29016|CD1B_HUMAN T-cell surface glycoprotein CD1b (Gene Name=CD1B)

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