Structure of PDB 5vrb Chain A Binding Site BS02

Receptor Information
>5vrb Chain A (length=627) Species: 521006 (Neisseria gonorrhoeae NCCP11945) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SQLANVIRFLSADAVQKANSGHPGAPMGMAEMAETLWTKFLNHNPANPKF
YNRDRFVLSNGHASMLLYSLLHLTGYNLSIEDLKNFRQLHSKTPGHPEYG
YTDGVETTTGPLGQGIANAVGMALAEKILAAEFNKDGLNIVDHYTYVFMG
DGCLMEGVSHEACSLAGTLGLGKLIVLYDDNNIGWFTENIPQRFESYGWH
VVPNVNGHDTAAIQTAIEAARAETGKPSIICCKTLEATRKHLGWAYPAFE
IPQEIYDAWNAKEKGAKLEAGWNELFAQYQAKYPAEAAEFVRRMDKKLPE
NFDEYVQTALKEVCAKAETVATRKASQNSIEILAKELPELVGGSADLTPS
NLTDWSNSVSVTRDKGGNYIHYGVREFGMGAIMNGLVLHGGVKPFGATFL
MFSEYERNALRMAALMKINPVFVFTHDSIGLGEDGPTHQPIEQTATLRLI
PNMDVWRPCDTAESLVAWAEAAKAEDHPSCLIFSRQNLKFQARSEQQLND
IKRGAYVISEAQGNAQAVIIATGSEVGLAVEAQKVLAGQGIAVRVVSMPS
TSVFDRQDAAYQAAVLPEGLPRIAVEAGHTNGWYKYVGLNGAVVGINRFG
ESAPADLLFKAFGFTVDNVVDTVKSVL
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain5vrb Chain A Residue 704 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5vrb Crystal structure of a transketolase from Neisseria gonorrhoeae
Resolution1.85 Å
Binding residue
(original residue number in PDB)		G151 D152 G153 C154
Binding residue
(residue number reindexed from 1)		G150 D151 G152 C153
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) H23 E408 Y437 H470
Catalytic site (residue number reindexed from 1) H22 E376 Y405 H438
Enzyme Commision number 2.2.1.1: transketolase.
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0004802 transketolase activity
GO:0016740 transferase activity
GO:0046872 metal ion binding
Biological Process
GO:0006098 pentose-phosphate shunt
Cellular Component
GO:0005829 cytosol

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5vrb, PDBe:5vrb, PDBj:5vrb
PDBsum5vrb
PubMed
UniProtB4RKU9

[Back to BioLiP]