Structure of PDB 5v6x Chain A Binding Site BS02

Receptor Information
>5v6x Chain A (length=84) Species: 192952 (Methanosarcina mazei Go1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NNKPLNTLISATGLWMSRTGTIHKIKHHEVSRSKIYIEMACGDHLVVNNS
RSSRPARALRYHKYRKTCKRCRVSDEDLNKFLTK
Ligand information
>5v6x Chain D (length=72) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ggaaaccugaucauguagaucgaauggacucuaaauccguucagccgggu
uagauucccgggguuuccgcca
<<<<<<<.<<<<.....>>>><<<<<<<.......>>>>>>>..<<<<<.
......>>>>>>>>>>>>....
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5v6x Crystal structures reveal an elusive functional domain of pyrrolysyl-tRNA synthetase.
Resolution2.76 Å
Binding residue
(original residue number in PDB)		K4 T8 V31 S32 R33 R52
Binding residue
(residue number reindexed from 1)		K3 T7 V30 S31 R32 R51
Enzymatic activity
Enzyme Commision number 6.1.1.26: pyrrolysine--tRNA(Pyl) ligase.
Gene Ontology
Molecular Function
GO:0004812 aminoacyl-tRNA ligase activity

View graph for
Molecular Function
External links
PDB RCSB:5v6x, PDBe:5v6x, PDBj:5v6x
PDBsum5v6x
PubMed29035363
UniProtQ8PWY1|PYLS_METMA Pyrrolysine--tRNA ligase (Gene Name=pylS)

[Back to BioLiP]