Structure of PDB 5u23 Chain A Binding Site BS02

Receptor Information
>5u23 Chain A (length=361) Species: 197 (Campylobacter jejuni) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HMFFLNLKQINDRFNTEFITKFKEILESGWYILGKQCEKFENNFAKYCGV
KHCIGVANGLDALRLIIKAYDFKENDEIIVPANTYIASILAITDNKCKPI
LIEPDINTYNINPDLIEEKITKKTKAIMVVHLYGQVCDMEKIQLLANKYN
LKIIEDCAQAHGAIYKDKRVGNLGDAAGFSFYPGKNLGALGDAGCICTND
DNFASKIRALANYGSHKKYENLYTGLNSRLDEIQAAFLDIKLKYLDEDNN
KRKNIANFYLQNIKNENIILPSNKFDHVWHLFVVKTKLRDELQHYLNNHD
IQTIIHYPIPPHKQKCYKDLNHLKLPITENIHQEVLSLPISPTMKENDFK
KVADILNKWKV
Ligand information
Ligand IDTQP
InChIInChI=1S/C24H35N4O19P3/c1-10-7-28(24(34)27-22(10)33)17-4-15(29)16(45-17)9-43-49(38,39)47-50(40,41)46-23-21(32)18(20(31)12(3)44-23)26-6-14-13(8-42-48(35,36)37)5-25-11(2)19(14)30/h5-7,12,15-18,20-21,23,29-32H,4,8-9H2,1-3H3,(H,38,39)(H,40,41)(H,27,33,34)(H2,35,36,37)/b26-6+/t12-,15+,16-,17-,18+,20-,21-,23-/m1/s1
InChIKeyUJDWKFAFGYHSFM-HMSDFHDVSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)C=NC2C(C(OC(C2O)OP(=O)(O)OP(=O)(O)OCC3C(CC(O3)N4C=C(C(=O)NC4=O)C)O)C)O)O
CACTVS 3.341C[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH](C[CH]2O)N3C=C(C)C(=O)NC3=O)[CH](O)[CH](N=Cc4c(O)c(C)ncc4CO[P](O)(O)=O)[CH]1O
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)\C=N\[C@H]2[C@@H]([C@H](O[C@@H]([C@@H]2O)O[P@](=O)(O)O[P@](=O)(O)OC[C@@H]3[C@H](C[C@@H](O3)N4C=C(C(=O)NC4=O)C)O)C)O)O
CACTVS 3.341C[C@H]1O[C@H](O[P@@](O)(=O)O[P@@](O)(=O)OC[C@H]2O[C@H](C[C@@H]2O)N3C=C(C)C(=O)NC3=O)[C@H](O)[C@@H](N=Cc4c(O)c(C)ncc4CO[P](O)(O)=O)[C@@H]1O
ACDLabs 10.04O=P(OC2OC(C(O)C(/N=C/c1c(cnc(c1O)C)COP(=O)(O)O)C2O)C)(O)OP(=O)(O)OCC4OC(N3C=C(C(=O)NC3=O)C)CC4O
FormulaC24 H35 N4 O19 P3
Name(2R,3R,4S,5S,6R)-3,5-dihydroxy-4-{[(1E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}-6-methyltetrahydro-2H-pyran-2-yl [(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl dihydrogen diphosphate
ChEMBL
DrugBank
ZINCZINC000098209462
PDB chain5u23 Chain B Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5u23 Structural investigation on WlaRG from Campylobacter jejuni: A sugar aminotransferase.
Resolution1.45 Å
Binding residue
(original residue number in PDB)
G28 W29 Y30 Y212 K217 N226
Binding residue
(residue number reindexed from 1)
G29 W30 Y31 Y213 K218 N227
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) Y84 D155 Q158 Y181 K184 Y218 R228
Catalytic site (residue number reindexed from 1) Y85 D156 Q159 Y182 K185 Y219 R229
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0008483 transaminase activity
GO:0030170 pyridoxal phosphate binding
Biological Process
GO:0000271 polysaccharide biosynthetic process

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:5u23, PDBe:5u23, PDBj:5u23
PDBsum5u23
PubMed28028852
UniProtQ9ALS9

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