Structure of PDB 5tmd Chain A Binding Site BS02

Receptor Information
>5tmd Chain A (length=440) Species: 39947 (Oryza sativa Japonica Group) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QVLLLPFPAAQGHTNPMLQFGRRLAYHGLRPTLVTTRYVLSTTPPPGDPF
RVAAISDGFDDASGMAALPDPGEYLRTLEAHGARTLAELLLSEARAGRPA
RVLVYDPHLPWARRVARAAGVATAAFLSQPCAVDLIYGEVCARRLALPVT
PTDARGLYARGVLGVELGPDDVPPFVAAPELTPAFCEQSIEQFAGLEDDD
DVLVNSFSDLEPKEAAYMESTWRAKTIGPSLPSFYLDDGRFRSTVPCMEW
LDKQPPRSVVLVSYGTVSTFDVAKLEELGNGLCNSGKPFLWVVRSNEEHK
LSVQLRKKCEKRGLIVPFCPQLEVLAHKATGCFLSHCGWNSTLEAIVNGV
PLVAMPHWADQPTISKYVESLWGMGVRVQLDKSGILQREEVERCIREVMD
GDRKEDYRRNATRLMKKAKESMQEGGSSDKNIAEFAAKYS
Ligand information
Ligand ID7E0
InChIInChI=1S/C15H22O2/c1-10-4-6-13(2)12(8-10)17-11-5-7-14(13,3)15(11)9-16-15/h8,11-12H,4-7,9H2,1-3H3/t11-,12-,13+,14-,15+/m1/s1
InChIKeyLZAJKCZTKKKZNT-QMIVOQANSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.6CC1=C[C@@H]2[C@](CC1)([C@]3(CC[C@H]([C@@]34CO4)O2)C)C
CACTVS 3.385CC1=C[CH]2O[CH]3CC[C](C)([C]2(C)CC1)[C]34CO4
ACDLabs 12.01CC1=CC2OC3CCC(C2(CC1)C)(C34CO4)C
OpenEye OEToolkits 2.0.6CC1=CC2C(CC1)(C3(CCC(C34CO4)O2)C)C
CACTVS 3.385CC1=C[C@H]2O[C@@H]3CC[C@](C)([C@@]2(C)CC1)[C@]34CO4
FormulaC15 H22 O2
Nametrichothecene;
(11beta)-12,13-epoxytrichothec-9-ene
ChEMBL
DrugBank
ZINC
PDB chain5tmd Chain A Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5tmd Crystal Structure of Os79 (Os04g0206600) from Oryza sativa: A UDP-glucosyltransferase Involved in the Detoxification of Deoxynivalenol.
Resolution2.19 Å
Binding residue
(original residue number in PDB)
H27 F199 Q202
Binding residue
(residue number reindexed from 1)
H13 F185 Q188
Annotation score1
Enzymatic activity
Enzyme Commision number 2.4.1.-
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0008194 UDP-glycosyltransferase activity
GO:0016757 glycosyltransferase activity
GO:0080043 quercetin 3-O-glucosyltransferase activity
GO:0080044 quercetin 7-O-glucosyltransferase activity
Biological Process
GO:0009636 response to toxic substance
GO:0098754 detoxification
Cellular Component
GO:0005737 cytoplasm

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:5tmd, PDBe:5tmd, PDBj:5tmd
PDBsum5tmd
PubMed27715009
UniProtQ7XT97|UGT79_ORYSJ UDP-glycosyltransferase 79 (Gene Name=UGT79)

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