Structure of PDB 5ta5 Chain A Binding Site BS02

Receptor Information

>5ta5 Chain A (length=624) Species: 820 (Bacteroides uniformis)

QTHVQLNLNVKHKLGDVTEFNRPKFINFHATINENYWDSANKIADLRDDL
IRKYDVYVGRETGMIKTVLRNVKEDPERPGFADPDDLARLCSQNKKRYVQ
NTKVHPYEKYSNLILCNQFSPFYPDGTKTLKGWALSQKDTEDEPFGTASG
EFYGRYIKEYFGEGGESGEPKPGFCEVINEPLWDIYDKPKAPKSSITKLF
EFHSTIAAQVKKFNPDMKVGGYCTAFPDFELQNFGRWNARWKQFIDIAGK
DMDFFTIHLYDFPCKDGKQMYRKGSNMEATMDMIEQYSMIKLGEVKPLMI
SEYSAQTHDYNRKPWSPYRDWLRLKSTNSMLMQFMERTDNICYAMPFAML
KSEWGYNPKTGLAHTARMLRRENEPESFTGEYVYSELIKFYQLWKDVKGT
RVETNCDNPDIMCDAYVDGKNVYFIINNLDFKPVDLNLSVNGTSKDAKSI
EVRHLYLKGGKDGVPILDVYDAKSLDHFTLETEATCVICYNFDRKVKINE
TMEEVKYYATDYLKEIAAGKELVFNINNVKKTEYGEAVIRLGLGRNHGLS
LLPELLVNGKKVDIPDNFRGDVQKDRASFFGVIEVPVDYSILKGNNTISL
KFPDNGGHVSTVTMQIFNFSNNIR

Ligand information

• Ligand ID: AAL
• InChI: InChI=1S/C6H10O5/c7-3-2-1-10-5(3)4(8)6(9)11-2/h2-9H,1H2/t2-,3+,4-,5+,6+/m0/s1
• InChIKey: DCQFFOLNJVGHLW-DSOBHZJASA-N
• SMILES:
  OpenEye OEToolkits 1.7.0: C1[C@H]2[C@H]([C@@H](O1)[C@@H]([C@@H](O2)O)O)O
  ACDLabs 11.02: OC2OC1C(O)C(OC1)C2O
  OpenEye OEToolkits 1.7.0: C1C2C(C(O1)C(C(O2)O)O)O
  CACTVS 3.352: O[CH]1O[CH]2CO[CH]([CH]1O)[CH]2O
  CACTVS 3.352: O[C@@H]1O[C@H]2CO[C@@H]([C@@H]1O)[C@@H]2O
• Formula: C6 H10 O5
• Name: 3,6-anhydro-alpha-L-galactopyranose;
  3,6-ANHYDRO-L-GALACTOSE;
  3,6-anhydro-alpha-L-galactose;
  3,6-anhydro-galactose
• ZINC: ZINC000005851684
• PDB chain: 5ta5 Chain C Residue 2

Receptor-Ligand Complex Structure

Structure summary

• PDB: 5ta5 Molecular basis of an agarose metabolic pathway acquired by a human intestinal symbiont.
• Resolution: 1.65 Å
• Binding residue (original residue number in PDB): E200 W203 F246 Q326
• Binding residue (residue number reindexed from 1): E180 W183 F226 Q306
• Annotation score: 1

Gene Ontology

Molecular Function

• GO:0046872 metal ion binding

External links

• PDB: RCSB:5ta5, PDBe:5ta5, PDBj:5ta5
• PDBsum: 5ta5
• PubMed: 29535379
• UniProt: A0A2D0TCD3