Structure of PDB 5ok0 Chain A Binding Site BS02

Receptor Information

>5ok0 Chain A (length=218) Species: 1358 (Lactococcus lactis)

MFKAVLFDLNGVITDTAEYHFRAWKALAEEIGINGVDRQFNEQLKGVSRE
DSLQKILDLADKKVSAEEFKELAKRKNDNYVKMIQDVSPADVYPGILQLL
KDLRSNKIKIALASASKNGPFLLERMNLTGYFDAIADPAEVAASKPAPDI
FIAAAHAVGVAPSESIGLEDSQAGIQAIKDSGALPIGVGRPEDLGDDIVI
VPDTSHYTLEFLKEVWLQ

Ligand information

• Ligand ID: MG
• InChI: InChI=1S/Mg/q+2
• InChIKey: JLVVSXFLKOJNIY-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Mg+2]
  CACTVS 3.341: [Mg++]
• Formula: Mg
• Name: MAGNESIUM ION
• DrugBank: DB01378
• PDB chain: 5ok0 Chain A Residue 302

Receptor-Ligand Complex Structure

Structure summary

• PDB: 5ok0 van der Waals Contact between Nucleophile and Transferring Phosphorus Is Insufficient To Achieve Enzyme Transition-State Architecture
• Resolution: 2.15 Å
• Binding residue (original residue number in PDB): D8 N10 D170
• Binding residue (residue number reindexed from 1): D8 N10 D170
• Annotation score: 1

Enzymatic activity

• Catalytic site (original residue number in PDB): D8 L9 N10 T16 K45 S114 A115 K145 E169 D170
• Catalytic site (residue number reindexed from 1): D8 L9 N10 T16 K45 S114 A115 K145 E169 D170
• Enzyme Commision number: 5.4.2.6: beta-phosphoglucomutase.

Gene Ontology

Molecular Function

• GO:0000287 magnesium ion binding
• GO:0008801 beta-phosphoglucomutase activity
• GO:0016853 isomerase activity
• GO:0046872 metal ion binding

Biological Process

• GO:0005975 carbohydrate metabolic process

Cellular Component

• GO:0005737 cytoplasm

External links

• PDB: RCSB:5ok0, PDBe:5ok0, PDBj:5ok0
• PDBsum: 5ok0
• UniProt: P71447|PGMB_LACLA Beta-phosphoglucomutase (Gene Name=pgmB)