Structure of PDB 5ob6 Chain A Binding Site BS02
Receptor Information
>5ob6 Chain A (length=129) Species:
9031
(Gallus gallus) [
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KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGS
TDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVS
DGNGMNAWVAWRNRCKGTDVQAWIRGCRL
Ligand information
Ligand ID
9Q8
InChI
InChI=1S/3CO.3H2O.Ru/c3*1-2;;;;/h;;;3*1H2;/q3*+1;;;;+3/p-3
InChIKey
CSTVJYAZRLCYQF-UHFFFAOYSA-K
SMILES
Software
SMILES
OpenEye OEToolkits 2.0.6
C(#[O+])[Ru](C#[O+])(C#[O+])(O)(O)O
CACTVS 3.385
O[Ru](O)(O)(C#[O+])(C#[O+])C#[O+]
Formula
C3 H3 O6 Ru
Name
tris(oxidaniumylidynemethyl)-tris(oxidanyl)ruthenium
ChEMBL
DrugBank
ZINC
PDB chain
5ob6 Chain A Residue 205 [
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Receptor-Ligand Complex Structure
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PDB
5ob6
Ru-Based CO releasing molecules with azole ligands: interaction with proteins and the CO release mechanism disclosed by X-ray crystallography.
Resolution
1.88 Å
Binding residue
(original residue number in PDB)
A11 H15 D87
Binding residue
(residue number reindexed from 1)
A11 H15 D87
Annotation score
1
Enzymatic activity
Catalytic site (original residue number in PDB)
E35 N46 D48 S50 D52 N59
Catalytic site (residue number reindexed from 1)
E35 N46 D48 S50 D52 N59
Enzyme Commision number
3.2.1.17
: lysozyme.
Gene Ontology
Molecular Function
GO:0003796
lysozyme activity
GO:0005515
protein binding
GO:0016231
beta-N-acetylglucosaminidase activity
GO:0016798
hydrolase activity, acting on glycosyl bonds
GO:0042802
identical protein binding
Biological Process
GO:0016998
cell wall macromolecule catabolic process
GO:0031640
killing of cells of another organism
GO:0042742
defense response to bacterium
GO:0050829
defense response to Gram-negative bacterium
GO:0050830
defense response to Gram-positive bacterium
Cellular Component
GO:0005576
extracellular region
GO:0005615
extracellular space
GO:0005737
cytoplasm
GO:0005783
endoplasmic reticulum
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Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:5ob6
,
PDBe:5ob6
,
PDBj:5ob6
PDBsum
5ob6
PubMed
28702564
UniProt
P00698
|LYSC_CHICK Lysozyme C (Gene Name=LYZ)
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