Structure of PDB 5nz8 Chain A Binding Site BS02

Receptor Information
>5nz8 Chain A (length=884) Species: 1515 (Acetivibrio thermocellus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MITKVTARNNKITPVELLNQKFGNKINLGNFADAVFTDAAFKNVAGIANL
PMKAPVMQVLMENCIVSKYLKQFVPDRSVCFVEEGQKFYIVLEDGQKIEV
PEDVNKALKATVSDVKHWAGYLTEDGEHVIDLLKPAPGPHFYVNLLIGNR
LGFKRTLQTTPKSVVDRFGRGSFRSHAATQVLATRFDMRQEENGFPANRQ
FYLYEDGKQIFYSALIDDNIVEATCKHSCNRTVIKYKTACNLEITRTIFL
VPHKKGFPLATELQRIEIKNASDKARNLSITYTGMFGTGAVHAIFEDVTY
TNVIMQSAALYNDKGEFIGITPDYYPEEFKQDTRFVTMIVRNGDEKSFPQ
SFCTDYNDFVGTGTLEHPAGGCNLNNKLNRKGPGFFALGAPFTVEPGKTV
IIDTFTGLSSSKDNENYSDAVMLRELDNLLRYFEKSESVEETLNEIINFH
ENYGKYFQFNTGNKLFDSGFNRNLAFQVLYQTFMSRSFGQTQKGYREIGF
REIQDLFASMYYFINIGYQDFVKELLFEWTANANHNFYWVGKQPGLYSDD
SLWLLQAYYRYIIYTKDTSVLDWNDCLKISVMNAFLLKLAIDHLAEIATL
DQQMSELSKEVTDRIQKHAWKENFFARVLINRYYTYLGAKGDKLSADPNI
DGVYFLNSFAWSVLSDVATDEQIAIMVDVIKKHLLTPYGLRLVTPADLNK
IGHYFFGDRENGAVFKHASMMAVAALIKAAKKVKDNELAKEMARIAYFMI
DLVLPYKNLENPFQVAGNPRICTQYINTDTGENIGPLLSGTATWLNLNLI
SLAGIEYTRDGISFNPILREEETQLNFTLKAPKCSYKFSITKPVGFARME
SSEYELFVDGQKIDNTVIPMYTDEKEHIVTLKFK
Ligand information
Ligand IDBGC
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5-,6-/m1/s1
InChIKeyWQZGKKKJIJFFOK-VFUOTHLCSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.370OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1O
CACTVS 3.370OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
OpenEye OEToolkits 1.7.6C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O)O
ACDLabs 12.01OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namebeta-D-glucopyranose;
beta-D-glucose;
D-glucose;
glucose
ChEMBLCHEMBL1614854
DrugBankDB02379
ZINCZINC000003833800
PDB chain5nz8 Chain C Residue 4 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5nz8 Cellodextrin phosphorylase from Ruminiclostridium thermocellum: X-ray crystal structure and substrate specificity analysis.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		R496 W622 N623 D624
Binding residue
(residue number reindexed from 1)		R496 W573 N574 D575
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0016757 glycosyltransferase activity
GO:0030246 carbohydrate binding
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0030245 cellulose catabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5nz8, PDBe:5nz8, PDBj:5nz8
PDBsum5nz8
PubMed28760417
UniProtQ93HT8

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