Structure of PDB 5nyy Chain A Binding Site BS02

Receptor Information

>5nyy Chain A (length=281) Species: 471852 (Thermomonospora curvata DSM 43183) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

NLYFQGHMVAIPGGTFRMGGEDPDAFPEDGEGPVRTVRLSPFLIDRYAVS
NRQFAAFVKATGYVTDAERYGWSFVFHAHVVVPEAPWWVAVPGAYWKAPE
GPGSSITDRPNHPVVHVSWNDAVAYATWAGKRLPTEAEWEMAARGGLDQA
RYPWGNELTPRGRHRCNIWQGTFPVHDTGEDGYTGTAPVNAFAPNGYGLY
NVAGNVWEWCADWWSADWHATESPATRIDPRGPETGTARVTKGGSFLCHE
SYCNRYRVAARTCNTPDSSAAHTGFRCAADP

Ligand information

Ligand ID

InChI

InChI=1S/Ca/q+2

InChIKey

BHPQYMZQTOCNFJ-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Ca++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Ca+2]

Formula

Name

CALCIUM ION

PDB chain

5nyy Chain A Residue 407 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5nyy Structural Basis for Copper-Oxygen Mediated C-H Bond Activation by the Formylglycine-Generating Enzyme.
Resolution	1.28 Å
Binding residue (original residue number in PDB)	N222 V223 G225 V227 E229 G264
Binding residue (residue number reindexed from 1)	N201 V202 G204 V206 E208 G243
Annotation score	1

Enzymatic activity

Enzyme Commision number

1.8.3.7: formylglycine-generating enzyme.

Gene Ontology

	Molecular Function
GO:0016491	oxidoreductase activity
GO:0046872	metal ion binding
GO:0120147	formylglycine-generating oxidase activity
GO:1903136	cuprous ion binding

	Biological Process
GO:0018158	protein oxidation
GO:0043687	post-translational protein modification

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Molecular Function

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Biological Process

External links

PDB	RCSB:5nyy, PDBe:5nyy, PDBj:5nyy
PDBsum	5nyy
PubMed	28544744
UniProt	D1A7C3\|FGE_THECD Formylglycine-generating enzyme (Gene Name=Tcur_4811)

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