Structure of PDB 5ly8 Chain A Binding Site BS02

Receptor Information

>5ly8 Chain A (length=230) Species: 1414736 (Lactobacillus phage J-1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

VKQKSERVYHLDFNQTPTGVTLNNGVTAFPYYEHGNDANVQSGPFGYANG
IAYPSTERTASNYWNGPSMSGTIPKNSNGSNTANFQFVNRVNVGTNAAEV
GRFEFNLTYQGKIVASLALFDDSASNDQWVFSGTVYDGSQAQMLFFDLLP
RNYYRDGNYNAVITKMGDQLTFRLDRIDLGDGGIETRTVSGFSSVPIDGW
TAWFPGFSDQRGWSINWQDSYFEWINVDYW

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

5ly8 Chain A Residue 302 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5ly8 Evolved distal tail carbohydrate binding modules of Lactobacillus phage J-1: a novel type of anti-receptor widespread among lactic acid bacteria phages.
Resolution	1.28 Å
Binding residue (original residue number in PDB)	D21 G59 Q227
Binding residue (residue number reindexed from 1)	D12 G50 Q218
Annotation score	4

Enzymatic activity

Enzyme Commision number

External links

PDB	RCSB:5ly8, PDBe:5ly8, PDBj:5ly8
PDBsum	5ly8
PubMed	28196397
UniProt	U5U3S0

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