Structure of PDB 5lps Chain A Binding Site BS02

Receptor Information
>5lps Chain A (length=341) Species: 264203 (Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RPRFSFSIAAREGKARTGTIEMKRGVIRTPAFMPVGTAATGADIILGNTY
HLMLRPGAERIAKLGGLHSFMGWDRPILTDSGGYQSEEGVTFKSHLDGSR
HMLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAASSMERSMRWAKRS
RDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLA
VGEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCV
LPTRSNGQAFTWDGPINIRNARFSEDLKPLDSKWSRAYIHHLIRAGEILG
AMLMTEHNIAFYQQLMQKIRDSISEGRFSQFAQDFRARYFA
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain5lps Chain A Residue 403 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5lps Carbohydrate-based Inhibitors targeting the Ribose-34 pocket of Z.mobilis TGT and changing the oligomeric state of the homodimer
Resolution1.27 Å
Binding residue
(original residue number in PDB)		D315 H349
Binding residue
(residue number reindexed from 1)		D281 H307
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) D102 D280 H349
Catalytic site (residue number reindexed from 1) D80 D248 H307
Enzyme Commision number 2.4.2.29: tRNA-guanosine(34) preQ1 transglycosylase.
Gene Ontology
Molecular Function
GO:0008479 tRNA-guanosine(34) queuine transglycosylase activity
GO:0016757 glycosyltransferase activity
GO:0016763 pentosyltransferase activity
GO:0046872 metal ion binding
Biological Process
GO:0002099 tRNA wobble guanine modification
GO:0006400 tRNA modification
GO:0008033 tRNA processing
GO:0008616 queuosine biosynthetic process
GO:0101030 tRNA-guanine transglycosylation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5lps, PDBe:5lps, PDBj:5lps
PDBsum5lps
PubMed
UniProtP28720|TGT_ZYMMO Queuine tRNA-ribosyltransferase (Gene Name=tgt)

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