Structure of PDB 5k9h Chain A Binding Site BS02

Receptor Information
>5k9h Chain A (length=554) Species: 32644 (unidentified) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EPCGPVPTENQLRWQDMEMYAFIHYSLNTYTDEEWGYGNEDPQLFNPSSL
DCRQWARVCKQAGMRGIIFTAKHHCGFCMWPSAYTEYSVKNSPWKNGKGD
VVRELADACREEGLKFAVYLSPWDRNHPAYGQPAYVAYFRNQLRELLTNY
GEIFEVWFDGANGGDGWYGGANETRKIDRTTYYQWPETYKMIRQLQPNCL
IWNDGSDRGDLRWVGTEAGNVGETNWSLLNHDGEVEWHMLHYGLENGDSW
VPGETNTSIRPGWFYHDTENEHVKSLSKLMDTYYKSVGRNSTLLLNFPIA
PNGRIHPNDSLRGIAFKKMIGEVFRKNLAEKARTQTKGDETVIDFGKPTT
FNRFLAEEDIRYGQRVKKFLLEAEINGQWQQLKDALVENGDGLTTIGHRR
IICFPTVNATKLRFTVVNTKCEPFIKKLGVYLAPELTADIPDAGEKKSSN
LHLFFSSPTQMMIDWETEQTITSFRYLPPQESKDGTVTHYTLWASTDWSN
WTKLASGEFSNVVNNPIWQTIKFQPVRAKILKLDADRLATGNRMAYGDVE
VNLK
Ligand information
Ligand IDGOL
InChIInChI=1S/C3H8O3/c4-1-3(6)2-5/h3-6H,1-2H2
InChIKeyPEDCQBHIVMGVHV-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0C(C(CO)O)O
ACDLabs 12.01
CACTVS 3.370		OCC(O)CO
FormulaC3 H8 O3
NameGLYCEROL;
GLYCERIN;
PROPANE-1,2,3-TRIOL
ChEMBLCHEMBL692
DrugBankDB09462
ZINCZINC000000895048
PDB chain5k9h Chain A Residue 602 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5k9h The structure of a glycoside hydrolase 29 family member from a rumen bacterium reveals unique, dual carbohydrate-binding domains.
Resolution2.029 Å
Binding residue
(original residue number in PDB)		D162 G163 D207 W216 E220
Binding residue
(residue number reindexed from 1)		D159 G160 D204 W213 E217
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004560 alpha-L-fucosidase activity
GO:0016787 hydrolase activity
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0006004 fucose metabolic process
GO:0016139 glycoside catabolic process
Cellular Component
GO:0005764 lysosome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5k9h, PDBe:5k9h, PDBj:5k9h
PDBsum5k9h
PubMed27710940
UniProtA0A1D5B391

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