Structure of PDB 5gm9 Chain A Binding Site BS02

Receptor Information

>5gm9 Chain A (length=213) Species: 578455 (Thermothielavioides terrestris NRRL 8126)

ASGSGQSTRYWDCCKPSCAWPGKAAVSQPVYACDANFQRLSDFNVQSGCN
GGSAYSCADQTPWAVNDNLAYGFAATSIAGGSESSWCCACYALTFTSGPV
AGKTMVVQSTSTGGDLGSNQFDIAMPGGGVGIFNGCSSQFGGLPGAQYGG
ISSRDQCDSFPAPLKPGCQWRFDWFQNADNPTFTFQQVQCPAEIVARSGC
KRNDDSSFPVFTP

Ligand information

• Ligand ID: BGC
• InChI: InChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5-,6-/m1/s1
• InChIKey: WQZGKKKJIJFFOK-VFUOTHLCSA-N
• SMILES:
  OpenEye OEToolkits 1.7.6: C(C1C(C(C(C(O1)O)O)O)O)O
  CACTVS 3.370: OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1O
  CACTVS 3.370: OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
  OpenEye OEToolkits 1.7.6: C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O)O
  ACDLabs 12.01: OC1C(O)C(OC(O)C1O)CO
• Formula: C6 H12 O6
• Name: beta-D-glucopyranose;
  beta-D-glucose;
  D-glucose;
  glucose
• ChEMBL: CHEMBL1614854
• DrugBank: DB02379
• ZINC: ZINC000003833800
• PDB chain: 5gm9 Chain B Residue 2

Receptor-Ligand Complex Structure

Structure summary

• PDB: 5gm9 Characterization and crystal structure of a thermostable glycoside hydrolase family 45 1,4-beta-endoglucanase from Thielavia terrestris
• Resolution: 1.36 Å
• Binding residue (original residue number in PDB): R9 Y10 D115 D122 G129 V130 G131 Y148
• Binding residue (residue number reindexed from 1): R9 Y10 D115 D122 G129 V130 G131 Y148
• Annotation score: 4

Enzymatic activity

• Catalytic site (original residue number in PDB): D12 D122
• Catalytic site (residue number reindexed from 1): D12 D122
• Enzyme Commision number: 3.2.1.4: cellulase.

Gene Ontology

Molecular Function

• GO:0008810 cellulase activity

Biological Process

• GO:0005975 carbohydrate metabolic process

External links

• PDB: RCSB:5gm9, PDBe:5gm9, PDBj:5gm9
• PDBsum: 5gm9
• PubMed: 28193329
• UniProt: G2QVH7