Structure of PDB 5f9d Chain A Binding Site BS02

Receptor Information
>5f9d Chain A (length=417) Species: 210 (Helicobacter pylori) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ENLSKLLTRYSTLNTLIKLSADPSAINAARENLGASAKNLIGDTKNSPAY
QAVLLAINAAVGFWNVLGYATQCGGNANGQESTSSTTIFNNEPGYRSTSI
TCSLNRYKPGYYGPMSIENFKKLNEAYQILQTALNKGLPALKENNGTINV
EYTYTCSGGGNTNCDPSLFGIGGDGRNGGSVTKTQTIDGKQVNTTISSKV
VQPPHSAAYTEITNALNGVPDSAQALLAQASTLINTINTACPYFSVTNGG
PQMEPTRGKLCGFTEEISAIQKMITDAQELVNQTSVINEHEQSTPVGGNN
GKPFNPFTDASFAQGMLANASAQAKMLNLAHQVGQTINPDNLTGTFKNFV
TGFLATCNNKSGSPPGTVTTQTFASGCAYVEQTITNLNNSIAHFGTQEQQ
IQQAENIADTLVNFGSH
Ligand information
Ligand IDFUC
InChIInChI=1S/C6H12O5/c1-2-3(7)4(8)5(9)6(10)11-2/h2-10H,1H3/t2-,3+,4+,5-,6+/m0/s1
InChIKeySHZGCJCMOBCMKK-SXUWKVJYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341C[C@@H]1O[C@@H](O)[C@@H](O)[C@H](O)[C@@H]1O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)C
OpenEye OEToolkits 1.5.0CC1C(C(C(C(O1)O)O)O)O
OpenEye OEToolkits 1.5.0C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O)O)O)O
CACTVS 3.341C[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
FormulaC6 H12 O5
Namealpha-L-fucopyranose;
alpha-L-fucose;
6-deoxy-alpha-L-galactopyranose;
L-fucose;
fucose
ChEMBLCHEMBL1232862
DrugBankDB04473
ZINCZINC000001532814
PDB chain5f9d Chain B Residue 5 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5f9d Structural Insights into Polymorphic ABO Glycan Binding by Helicobacter pylori.
Resolution2.59 Å
Binding residue
(original residue number in PDB)		S190 G191 N194 R209 T243
Binding residue
(residue number reindexed from 1)		S157 G158 N161 R176 T210
Annotation score4
Enzymatic activity
Enzyme Commision number ?
External links