Structure of PDB 5f3w Chain A Binding Site BS02

Receptor Information
>5f3w Chain A (length=352) Species: 243232 (Methanocaldococcus jannaschii DSM 2661) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HMMFVHIADNHLGYRQYNLDDREKDIYDSFKLCIKKILEIKPDVVLHSGD
LFNDLRPPVKALRIAMQAFKKLHENNIKVYIVAGNHEMPRRLGEESPLAL
LKDYVKILDGKDVINVNGEEIFICGTYYHKKSKREEMLDKLKNFESEAKN
YKKKILMLHQGINPYIPLDYELEHFDLPKFSYYALGHIHKRILERFNDGI
LAYSGSTEIIYRNEYEDYKKEGKGFYLVDFSGNDLDISDIEKIDIECREF
VEVNIKDKKSFNEAVNKIERCKNKPVVFGKIKREFKPWFDTLKDKILINK
AIIVDDNIKELLVDYANRQGIDGDLVLSLYKALLNNENWKELLDEYYNTK
FR
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain5f3w Chain A Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5f3w ATP-dependent DNA binding, unwinding, and resection by the Mre11/Rad50 complex
Resolution3.11 Å
Binding residue
(original residue number in PDB)		D49 N84 H158 H186
Binding residue
(residue number reindexed from 1)		D50 N85 H159 H187
Annotation score4
Enzymatic activity
Enzyme Commision number 3.1.-.-
Gene Ontology
Molecular Function
GO:0000403 Y-form DNA binding
GO:0003677 DNA binding
GO:0004519 endonuclease activity
GO:0004527 exonuclease activity
GO:0004529 DNA exonuclease activity
GO:0008408 3'-5' exonuclease activity
GO:0016787 hydrolase activity
GO:0030145 manganese ion binding
GO:0042802 identical protein binding
GO:0045027 DNA end binding
GO:0046872 metal ion binding
Biological Process
GO:0006281 DNA repair
GO:0006302 double-strand break repair

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5f3w, PDBe:5f3w, PDBj:5f3w
PDBsum5f3w
PubMed26717941
UniProtQ58719|MRE11_METJA DNA double-strand break repair protein Mre11 (Gene Name=mre11)

[Back to BioLiP]