Structure of PDB 5ere Chain A Binding Site BS02

Receptor Information
>5ere Chain A (length=540) Species: 485915 (Desulfohalobium retbaense DSM 5692) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KPVVGVILPFSSAFEDIAVEQQRAVELALAESGSAFEIVFKDGGADVDTA
VQAFQDLVRSQENLAAVVSCSSWASSAIHPLAAEKDIFHVAIGSAALKRT
EPGHTIRLTVGVQQEQEQLAAYLTDFERIAVLAMDNNLGSSWIRMLEDRF
PKQVVAAQEYNPQQMDIAAQLATIKARDSEALVLISAGEAATIAKQARQA
GIKAQLVGTRPIQRAEVLAASAFTNGLVYTYPSYNQDHPFMSAFTDRYGL
EPGFFGVEAYDLCTTLSRALEQGRQTPKALFEWYAGNTFTGALGKVTFAN
DGDASYPYIFKKVTESGFRVAEFQFPMLLTQTAQELNAIFKDMDRSVAAA
AEQLSTTGLRGDRASAILETLFNENQYAYNCVTVDATGTIVNVAPKQYSS
VIGEDISGQEQIIRLHETHQPVLSQAIKMVEGFVGIDLEHPVFDQDGGFI
GSVSVLTQPDFFGSIISRKVHNFPVEIFVLQRDGTTIYDVNAEEIGKNAF
AIARKMVSQAEGEGTYRAKQLLWTSIGLHGTNYRLALTYG
Ligand information
Ligand IDCYT
InChIInChI=1S/C4H5N3O/c5-3-1-2-6-4(8)7-3/h1-2H,(H3,5,6,7,8)
InChIKeyOPTASPLRGRRNAP-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=C1N=CC=C(N)N1
OpenEye OEToolkits 1.5.0C1=C(NC(=O)N=C1)N
CACTVS 3.341NC1=CC=NC(=O)N1
FormulaC4 H5 N3 O
Name6-AMINOPYRIMIDIN-2(1H)-ONE;
CYTOSINE
ChEMBLCHEMBL15913
DrugBank
ZINCZINC000000895210
PDB chain5ere Chain A Residue 602 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5ere A novel extracellular ligand receptor
Resolution2.0 Å
Binding residue
(original residue number in PDB)		V413 I437 Q440 M460 V461 E462 D468
Binding residue
(residue number reindexed from 1)		V382 I406 Q409 M429 V430 E431 D437
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5ere, PDBe:5ere, PDBj:5ere
PDBsum5ere
PubMed
UniProtC8WZ86

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