Structure of PDB 5dzv Chain A Binding Site BS02

Receptor Information

>5dzv Chain A (length=521) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

QLHYSVPEEAKHGTFVGRIAQDLGLELTELVPRLFRVASKDRGDLLEVNL
QNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVEVKDINDN
PPMFPATQKALFILESRLLDSRFPLEGASDADVGSNALLTYRLSTNEHFS
LDVPPNHEQVKPLGLVLRKPLDREEAAEIRLLLTATDGGKPELTGTVQLL
ITVLDVNDNAPVFDRSLYTVKLPENVPNGTLVIKVNASDLDEGVNGDVMY
SFSSDVSSDIKSKFHMDTVSGEITVIGIIDFEESKAYKIPLEARDKGFPQ
LPGHCTILVEVVDANDNAPQLTVSSLSLPVSEDSQPGRVVTLISVFDRDS
GANGQVTCSLTPHIPFKLVSTFKNYYSLVLDSALDRETIANYDVIVTARD
GGSPSLWATASVSVEVADVNDNAPLFAQPEYTVFVKENNPPGAHIFTVSA
MDADAQENALVSYSLVERRVGERLLSSYVSVHAESGKVFALQPLLQFQVS
ARDAGVPALGSNVTLQVFVLD

Ligand information

Ligand ID

InChI

InChI=1S/Ca/q+2

InChIKey

BHPQYMZQTOCNFJ-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Ca++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Ca+2]

Formula

Name

CALCIUM ION

PDB chain

5dzv Chain A Residue 602 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	5dzv Structural Basis of Diverse Homophilic Recognition by Clustered alpha- and beta-Protocadherins.
Resolution	3.6 Å
Binding residue (original residue number in PDB)	N100 D130 D132 N136 D187
Binding residue (residue number reindexed from 1)	N100 D130 D132 N136 D187
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0005509	calcium ion binding

	Biological Process
GO:0007155	cell adhesion
GO:0007156	homophilic cell adhesion via plasma membrane adhesion molecules

	Cellular Component
GO:0005886	plasma membrane
GO:0016020	membrane

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:5dzv, PDBe:5dzv, PDBj:5dzv
PDBsum	5dzv
PubMed	27161523
UniProt	Q91Y13\|PCDA7_MOUSE Protocadherin alpha-7 (Gene Name=Pcdha7)

[Back to BioLiP]