Structure of PDB 5d1o Chain A Binding Site BS02

Receptor Information
>5d1o Chain A (length=375) Species: 187420 (Methanothermobacter thermautotrophicus str. Delta H) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DIPFDLIQERTGVPSSRLKVAFARGSLRLLESAGMQALLFKKPLGDLEAG
TVIYLGDETEVIRGFPKIRRTLLLSPTIQEHFRDRVAVEEKMNGYNVRIA
CLSSGETVALTRGGHVCPFTTRKAQELLDLSEFFREHPDLVICGEMIGRD
NPYVSQDYPEVGPLGFRVFDLREKNTNRPLPVEERRALLDSYGLPNVRLF
GVYPIEEAASEVADIIRALGMAGREGVVMKDPSMEVPPLKYTSSQAHARE
LAYAFSYPFDFGRPFFFSRVIREGFQAYELDESDDETRERARRLGEAIIY
PMLERIKSISAGEAAYEDTVIDVEDREAAEEFIRHLVRLGVSATLADYRD
GRATIRRFYQSTTDRINNYLKGGLY
Ligand information
Ligand IDSO4
InChIInChI=1S/H2O4S/c1-5(2,3)4/h(H2,1,2,3,4)/p-2
InChIKeyQAOWNCQODCNURD-UHFFFAOYSA-L
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0[O-]S(=O)(=O)[O-]
CACTVS 3.341[O-][S]([O-])(=O)=O
ACDLabs 10.04[O-]S([O-])(=O)=O
FormulaO4 S
NameSULFATE ION
ChEMBL
DrugBankDB14546
ZINC
PDB chain5d1o Chain A Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5d1o Structural and mutational analysis of archaeal ATP-dependent RNA ligase identifies amino acids required for RNA binding and catalysis.
Resolution2.648 Å
Binding residue
(original residue number in PDB)		R76 K246
Binding residue
(residue number reindexed from 1)		R70 K240
Annotation score3
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5d1o, PDBe:5d1o, PDBj:5d1o
PDBsum5d1o
PubMed26896806
UniProtO27289

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