Structure of PDB 5ae6 Chain A Binding Site BS02

Receptor Information
>5ae6 Chain A (length=762) Species: 51453 (Trichoderma reesei) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ENNQTYANYSAQGQPDLYPETLATLTLSFPDCEHGPLKNNLVCDSSAGYV
ERAQALISLFTLEELILNTQNSGPGVPRLGLPNYQVWNEALHGLDRANFA
TKGGQFEWATSFPMPILTTAALNRTLIHQIADIISTQARAFSNSGRYGLD
VYAPNVNGFRSPLWGRGQETPGEDAFFLSSAYTYEYITGIQGGVDPEHLK
VAATVKHFAGYDLENWNNQSRLGFDAIITQQDLSEYYTPQFLAAARYAKS
RSLMCAYNSVNGVPSCANSFFLQTLLRESWGFPEWGYVSSDCDAVYNVFN
PHDYASNQSSAAASSLRAGTDIDCGQTYPWHLNESFVAGEVSRGEIERSV
TRLYANLVRLGYFDKKNQYRSLGWKDVVKTDAWNISYEAAVEGIVLLKND
GTLPLSKKVRSIALIGPWANATTQMQGNYYGPAPYLISPLEAAKKAGYHV
NFELGTEIAGNSTTGFAKAIAAAKKSDAIIYLGGIDNTIEQEGADRTDIA
WPGNQLDLIKQLSEVGKPLVVLQMGGGQVDSSSLKSNKKVNSLVWGGYPG
QSGGVALFDILSGKRAPAGRLVTTQYPAEYVHQFPQNDMNLRPDGKSNPG
QTYIWYTGKPVYEFGSGLFYTTFKETLALKFNTSSILSAPHPGYTYSEQI
PVFTFEANIKNSGKTESPYTAMLFVRTSNAGPAPYPNKWLVGFDRLADIK
PGHSSKLSIPIPVSALARVDSHGNRIVYPGKYELALNTDESVKLEFELVG
EEVTIENWPLEE
Ligand information
Ligand IDTXB
InChIInChI=1S/C5H10O4S/c6-3-2(10)1-9-5(8)4(3)7/h2-8,10H,1H2/t2-,3+,4-,5+/m1/s1
InChIKeyMFDZOCXKSSGEBR-LECHCGJUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6C1C(C(C(C(O1)O)O)O)S
OpenEye OEToolkits 1.7.6C1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)S
CACTVS 3.385O[CH]1OC[CH](S)[CH](O)[CH]1O
CACTVS 3.385O[C@H]1OC[C@@H](S)[C@H](O)[C@H]1O
FormulaC5 H10 O4 S
Name4-deoxy-4-thio-alpha-D-xylopyranose;
(2S,3R,4R,5R)-5-sulfanyloxane-2,3,4-triol;
THIOXYLOPYRANOSE;
4-deoxy-4-thio-alpha-D-xylose;
4-deoxy-4-thio-D-xylose;
4-deoxy-4-thio-xylose
ChEMBL
DrugBank
ZINCZINC000584905764
PDB chain5ae6 Chain G Residue 1 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5ae6 Th Crystal Structure of a Fungal Glycoside Hydrolase Family 3 Beta-Xylosidase, Xyl3A from Hypocrea Jecorina
Resolution2.1 Å
Binding residue
(original residue number in PDB)
Q14 P15 L17 Y257 Y429 E492
Binding residue
(residue number reindexed from 1)
Q14 P15 L17 Y257 Y429 E492
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) D291 E490
Catalytic site (residue number reindexed from 1) D291 E490
Enzyme Commision number 3.2.1.37: xylan 1,4-beta-xylosidase.
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0009044 xylan 1,4-beta-xylosidase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0046556 alpha-L-arabinofuranosidase activity
GO:0046872 metal ion binding
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0031222 arabinan catabolic process
GO:0045493 xylan catabolic process
Cellular Component
GO:0009505 plant-type cell wall

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:5ae6, PDBe:5ae6, PDBj:5ae6
PDBsum5ae6
PubMed
UniProtQ92458

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