Structure of PDB 4y7v Chain A Binding Site BS02

Receptor Information
>4y7v Chain A (length=216) Species: 931281 (Pseudomonas putida BIRD-1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKAMILAAGKGERMRPLTLHTPKPLVPVAGQPLIEYHLRALAAAGVTEVV
INHAWLGQQIEDHLGDGSRFGLSIRYSPEGEPLETGGGIFKALPLLGDAP
FLLVNGDVWTDYDFARLQAPLQGLAHLVLVDNPGRGDFRLVGEQVVDGDD
GTLTFSGISVLHPALFEGCQAGAFKLAPLLRQAMAAGKVSGEHYRGHWVD
VGTLERLAEAESLIGE
Ligand information
Ligand ID2PN
InChIInChI=1S/H5NO6P2/c2-8(3,4)1-9(5,6)7/h(H5,1,2,3,4,5,6,7)
InChIKeyGNGSOPFGGKKDQP-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341O[P](O)(=O)N[P](O)(O)=O
OpenEye OEToolkits 1.5.0N(P(=O)(O)O)P(=O)(O)O
ACDLabs 10.04O=P(O)(O)NP(=O)(O)O
FormulaH5 N O6 P2
NameIMIDODIPHOSPHORIC ACID
ChEMBLCHEMBL265450
DrugBank
ZINCZINC000263621374
PDB chain4y7v Chain A Residue 304 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB4y7v Crystal Structure of the N-Acetylmuramic Acid alpha-1-Phosphate (MurNAc-alpha 1-P) Uridylyltransferase MurU, a Minimal Sugar Nucleotidyltransferase and Potential Drug Target Enzyme in Gram-negative Pathogens.
Resolution1.8 Å
Binding residue
(original residue number in PDB)		G9 K10 G11 E12 R13 K23
Binding residue
(residue number reindexed from 1)		G9 K10 G11 E12 R13 K23
Annotation score1
Enzymatic activity
Enzyme Commision number 2.7.7.99: N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase.
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0002134 UTP binding
GO:0016779 nucleotidyltransferase activity
GO:0046872 metal ion binding
GO:0070569 uridylyltransferase activity
GO:0097367 carbohydrate derivative binding
Biological Process
GO:0008360 regulation of cell shape
GO:0009058 biosynthetic process
GO:0009252 peptidoglycan biosynthetic process
GO:0009254 peptidoglycan turnover
GO:0046677 response to antibiotic
GO:0071555 cell wall organization
GO:0097172 N-acetylmuramic acid metabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:4y7v, PDBe:4y7v, PDBj:4y7v
PDBsum4y7v
PubMed25767118
UniProtQ88QT2|MURU_PSEPK N-acetylmuramate alpha-1-phosphate uridylyltransferase (Gene Name=murU)

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