Structure of PDB 4x9m Chain A Binding Site BS02

Receptor Information

>4x9m Chain A (length=384) Species: 272634 (Mycoplasmoides pneumoniae M129) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

METRDVLIVGGGVIGCATAYELSQYKLKVTLVEKHHYLAQETSHANSGVI
HTGIDPNPHKLTAKYNILGKKLWLNTYFKRLGFPRQKIRTLIVAFNEMER
EQLEVLKQRGIANQINLEDIQMLSKEETLKLEPYVNPEIVAGLKIEGSWA
IDPVLASKCLALAAQQNKVQICTNTEVTNISKQVDGTYLVWTNNETTPSF
KVKKIIDAAGHYADYLAHLAKADDFEQTTRRGQYVVVTNQGELHLNSMVF
MVPTIHGKGVIVSPMLDGNFLVGPTALDGVDKEATRYITKDAPCMLTKIG
KHMVPSLNINNALISFAGSRPIDKATNDFIIRVAHNDPDFVILGGMKSPG
LTAAPAIVREAVRLLNWKLTKKPNWNGKYNLPWI

Ligand information

Ligand ID

G3P

InChI

InChI=1S/C3H9O6P/c4-1-3(5)2-9-10(6,7)8/h3-5H,1-2H2,(H2,6,7,8)/t3-/m1/s1

InChIKey

AWUCVROLDVIAJX-GSVOUGTGSA-N

SMILES

Software	SMILES
OpenEye OEToolkits 1.7.6	C(C(COP(=O)(O)O)O)O
CACTVS 3.385	OC[C@@H](O)CO[P](O)(O)=O
ACDLabs 12.01	O=P(OCC(O)CO)(O)O
OpenEye OEToolkits 1.7.6	C([C@H](COP(=O)(O)O)O)O
CACTVS 3.385	OC[CH](O)CO[P](O)(O)=O

Formula

C3 H9 O6 P

Name

SN-GLYCEROL-3-PHOSPHATE

PDB chain

4x9m Chain A Residue 403 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	4x9m Structure and proposed mechanism of l-alpha-glycerophosphate oxidase from Mycoplasma pneumoniae.
Resolution	2.4 Å
Binding residue (original residue number in PDB)	S47 H51 K258 G259 R320 S348
Binding residue (residue number reindexed from 1)	S47 H51 K258 G259 R320 S348
Annotation score	5

Enzymatic activity

Enzyme Commision number

1.1.3.21: glycerol-3-phosphate oxidase.

External links

PDB	RCSB:4x9m, PDBe:4x9m, PDBj:4x9m
PDBsum	4x9m
PubMed	25688572
UniProt	P75063\|GLPO_MYCPN Glycerol 3-phosphate oxidase (Gene Name=glpD)

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