Structure of PDB 4rw3 Chain A Binding Site BS02

Receptor Information
>4rw3 Chain A (length=279) Species: 58218 (Loxosceles intermedia) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GNRRPIWIMGHMVNAIGQIDEFVNLGANSIETDVSFDDNANPEYTYHGIP
CDCGRNCKKYENFNDFLKGLRSATTPGNSKYQEKLVLVVFDLKTGSLYDN
QANDAGKKLAKNLLQHYWNNGNNGGRAYIVLSIPDLNHYPLIKGFKDQLT
KDGHPELMDKVGHDFSGNDDIGDVGKAYKKAGITGHIWQSDGITNCLPRG
LSRVNAAVANRDSANGFINKVYYWTVDKRSTTRDALDAGVDGIMTNYPDV
ITDVLNEAAYKKKFRVATYDDNPWVTFKK
Ligand information
Ligand IDIPD
InChIInChI=1S/C6H13O9P/c7-1-2(8)4(10)6(5(11)3(1)9)15-16(12,13)14/h1-11H,(H2,12,13,14)/p-2/t1-,2-,3+,4-,5-,6-/m1/s1
InChIKeyINAPMGSXUVUWAF-UOTPTPDRSA-L
SMILES
SoftwareSMILES
ACDLabs 12.01O=P([O-])([O-])OC1C(O)C(O)C(O)C(O)C1O
CACTVS 3.370O[C@@H]1[C@@H](O)[C@@H](O)[C@@H](O[P]([O-])([O-])=O)[C@H](O)[C@H]1O
OpenEye OEToolkits 1.7.6[C@H]1([C@H](C([C@@H]([C@@H](C1O)O)O)OP(=O)([O-])[O-])O)O
OpenEye OEToolkits 1.7.6C1(C(C(C(C(C1O)O)OP(=O)([O-])[O-])O)O)O
CACTVS 3.370O[CH]1[CH](O)[CH](O)[CH](O[P]([O-])([O-])=O)[CH](O)[CH]1O
FormulaC6 H11 O9 P
NameD-MYO-INOSITOL-1-PHOSPHATE
ChEMBL
DrugBank
ZINC
PDB chain4rw3 Chain A Residue 304 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB4rw3 Structural Insights into Substrate Binding of Brown Spider Venom Class II Phospholipases D.
Resolution1.72 Å
Binding residue
(original residue number in PDB)
H12 E32 H48 D92 K94 Y223 W225
Binding residue
(residue number reindexed from 1)
H11 E31 H47 D91 K93 Y222 W224
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) H12 E32 D34 H48 G49 D53 D92 K94 W225 D228 N247
Catalytic site (residue number reindexed from 1) H11 E31 D33 H47 G48 D52 D91 K93 W224 D227 N246
Enzyme Commision number 4.6.1.-
Gene Ontology
Molecular Function
GO:0008081 phosphoric diester hydrolase activity
GO:0016829 lyase activity
GO:0046872 metal ion binding
GO:0090729 toxin activity
Biological Process
GO:0006629 lipid metabolic process
GO:0016042 lipid catabolic process
GO:0031640 killing of cells of another organism
GO:0035821 modulation of process of another organism
Cellular Component
GO:0005576 extracellular region

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:4rw3, PDBe:4rw3, PDBj:4rw3
PDBsum4rw3
PubMed25961401
UniProtP0CE82|A1HB2_LOXIN Dermonecrotic toxin LiSicTox-alphaIA1bii (Fragment)

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