Structure of PDB 4qi5 Chain A Binding Site BS02

Receptor Information
>4qi5 Chain A (length=585) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PVPTGVSFDYIVVGGGAGGIPAADKLSEAGKSVLLIEKGFASTANTGGTL
GPEWLEGHDLTRFDVPGLCNQIWVDSKGIACEDTDQMAGCVLGGGTAVNA
GLWFKPYSLDWDYLFPDGWKYNDVQPAINRALSRIPGTDAPSTDGKRYYQ
EGFEVLSKGLAAGGWTSVTANNAPDKKNRTFAHAPFMFAGGERNGPLGTY
FQTAKKRNNFDVWLNTSVKRVIREGGHITGVEVEPFRDGGYEGIVPVTKV
TGRVILSAGTFGSAKILLRSGIGPEDQLEVVAASEKDGPTMIGNSSWINL
PVGYNLDDHLNTDTVISHPDVVFYDFYEAWDDPIESDKNSYLESRTGILA
QAAPNIGPMFWEEIVGADGIVRQLQWTARVEGSLGAPNGHTMTMSQYLGR
GATSRGRMTITPSLTTIVSDVPYLKDPNDKEAVIQGIINLQNALQNVANL
TWLFPNSTITPREYVESMVVSPSNRRSNHWMGTNKLGTDDGRKGGSAVVD
LDTRVYGTDNLFVIDASIFPGVPTTNPTSYIVVAAEHASSRILALPDLEP
VPKYGQCGGREWTGSFVCADGSTCEYQNEWYSQCL
Ligand information
Ligand IDABL
InChIInChI=1S/C12H21NO10/c14-1-3-10(7(18)8(19)11(21)13-3)23-12-9(20)6(17)5(16)4(2-15)22-12/h3-10,12,14-20H,1-2H2,(H,13,21)/t3-,4-,5-,6+,7-,8-,9-,10-,12+/m1/s1
InChIKeyWXSNJJDPPISYEF-ZNLUKOTNSA-N
SMILES
SoftwareSMILES
ACDLabs 12.01O=C2NC(C(OC1OC(C(O)C(O)C1O)CO)C(O)C2O)CO
OpenEye OEToolkits 1.7.2C([C@@H]1[C@H]([C@@H]([C@H](C(=O)N1)O)O)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O
CACTVS 3.370OC[C@H]1NC(=O)[C@H](O)[C@@H](O)[C@@H]1O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O
OpenEye OEToolkits 1.7.2C(C1C(C(C(C(=O)N1)O)O)OC2C(C(C(C(O2)CO)O)O)O)O
CACTVS 3.370OC[CH]1NC(=O)[CH](O)[CH](O)[CH]1O[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O
FormulaC12 H21 N O10
Name(2R,3R,4R,5R)-4,5-dihydroxy-2-(hydroxymethyl)-6-oxopiperidin-3-yl beta-D-glucopyranoside;
5-amino-5-deoxy-cellobiono-1,5-lactam;
(2R,3R,4R,5R)-4,5-dihydroxy-2-(hydroxymethyl)-6-oxopiperidin-3-yl beta-D-glucoside;
(2R,3R,4R,5R)-4,5-dihydroxy-2-(hydroxymethyl)-6-oxopiperidin-3-yl D-glucoside;
(2R,3R,4R,5R)-4,5-dihydroxy-2-(hydroxymethyl)-6-oxopiperidin-3-yl glucoside
ChEMBL
DrugBankDB04096
ZINCZINC000015787448
PDB chain4qi5 Chain A Residue 902 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB4qi5 Structural basis for cellobiose dehydrogenase action during oxidative cellulose degradation.
Resolution2.4 Å
Binding residue
(original residue number in PDB)
W295 A322 R601 E603 Y619 S699 N700 H701 N748
Binding residue
(residue number reindexed from 1)
W73 A100 R379 E381 Y397 S477 N478 H479 N526
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) S558 S617 Y619 S699 H701 T747 N748
Catalytic site (residue number reindexed from 1) S336 S395 Y397 S477 H479 T525 N526
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
GO:0030248 cellulose binding
GO:0050660 flavin adenine dinucleotide binding
Biological Process
GO:0005975 carbohydrate metabolic process
Cellular Component
GO:0005576 extracellular region

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:4qi5, PDBe:4qi5, PDBj:4qi5
PDBsum4qi5
PubMed26151670
UniProtA9XK88

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