Structure of PDB 4odj Chain A Binding Site BS02

Receptor Information
>4odj Chain A (length=386) Species: 237895 (Cryptosporidium hominis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EQFLFSSESVCSGHPDKLCDQISDAILDACLEQDPESFVACETCTKTGFI
MVFGEITTKANVNYERVVRETVKEIGYDSEEKGLDYKTMDVIIKLEQQSN
QIAGCVHVDKNVEDIGAGDQGMMFGYATNETKELMPLTHVLATSITRELD
YIRMKGVSSRVGWLRPDGKAQVTVEYNCKHGVLIPKRIHTILVSVQHDEN
IENEEIREFVLENVIKKVCPSDLMDKETRILINPSGRFTIGGPAADAGLT
GRKIIVDTYGGWGAHGGGAFSGKDATKVDRSGAYMARLVAKSIVFSGLCS
RCLVQVSYGIGIARPLSLYINTFGTAKDGYNDTKLLEIVNKVFDFRPGIL
IKQLNLKSPIFKKTSSGGHFGRSEKEFLWEKPIILQ
Ligand information
Ligand ID3PO
InChIInChI=1S/H5O10P3/c1-11(2,3)9-13(7,8)10-12(4,5)6/h(H,7,8)(H2,1,2,3)(H2,4,5,6)
InChIKeyUNXRWKVEANCORM-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341O[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O
OpenEye OEToolkits 1.5.0OP(=O)(O)OP(=O)(O)OP(=O)(O)O
ACDLabs 10.04O=P(OP(=O)(O)OP(=O)(O)O)(O)O
FormulaH5 O10 P3
NameTRIPHOSPHATE
ChEMBLCHEMBL1230191
DrugBankDB03896
ZINCZINC000006827739
PDB chain4odj Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB4odj Crystal structure of a putative S-adenosylmethionine synthetase from Cryptosporidium hominis in complex with S-adenosyl-methionine
Resolution1.6 Å
Binding residue
(original residue number in PDB)		H34 D36 K189 R272 K273
Binding residue
(residue number reindexed from 1)		H14 D16 K169 R252 K253
Annotation score3
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 29 12:02:35 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4odj', asym_id = 'A', bs = 'BS02', title = 'Crystal structure of a putative S-adenosylmethio...ium hominis in complex with S-adenosyl-methionine'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4odj', asym_id='A', bs='BS02', title='Crystal structure of a putative S-adenosylmethio...ium hominis in complex with S-adenosyl-methionine')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0004478,0005524,0006556', uniprot = '', pdbid = '4odj', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004478,0005524,0006556', uniprot='', pdbid='4odj', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>