Structure of PDB 4nic Chain A Binding Site BS02

Receptor Information

>4nic Chain A (length=117) Species: 573 (Klebsiella pneumoniae)

NKIVFVEDDPEVGTLIAAYLGKHDMDVVVEPRGDRAEEVIAREKPDLVLL
DIMLPGKDGMTLCRDLRGQWQGPIVLLTSLDSDMNHILSLEMGASDYILK
TTPPAVLLARLRLHLRQ

Ligand information

• Ligand ID: BEF
• InChI: InChI=1S/Be.3FH/h;3*1H/q+2;;;/p-3
• InChIKey: OGIAHMCCNXDTIE-UHFFFAOYSA-K
• SMILES:
  OpenEye OEToolkits 1.5.0: [Be-](F)(F)F
  ACDLabs 10.04
  CACTVS 3.341: F[Be-](F)F
• Formula: Be F3
• Name: BERYLLIUM TRIFLUORIDE ION
• PDB chain: 4nic Chain A Residue 202

Receptor-Ligand Complex Structure

Structure summary

• PDB: 4nic Structural dynamics of the two-component response regulator RstA in recognition of promoter DNA element.
• Resolution: 3.18 Å
• Binding residue (original residue number in PDB): D52 I53 M54 T79 S80 K101
• Binding residue (residue number reindexed from 1): D51 I52 M53 T78 S79 K100
• Annotation score: 1

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Nov 15 06:24:33 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4nic', asym_id = 'A', bs = 'BS02', title = 'Structural dynamics of the two-component respons...ator RstA in recognition of promoter DNA element.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4nic', asym_id='A', bs='BS02', title='Structural dynamics of the two-component respons...ator RstA in recognition of promoter DNA element.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0000160', uniprot = '', pdbid = '4nic', asym_id = 'A'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0000160', uniprot='', pdbid='4nic', asym_id='A')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>