Structure of PDB 4mg5 Chain A Binding Site BS02

Receptor Information
>4mg5 Chain A (length=241) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SLALSLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADREL
VHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLF
APNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILL
NSGVYTFSTLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQ
LLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLLLEMLDAH
Ligand information
Ligand ID27E
InChIInChI=1S/C10Cl10O/c11-2-1(21)3(12)6(15)4(2,13)8(17)5(2,14)7(3,16)9(6,18)10(8,19)20/t2-,3+,4-,5+,6+,7-,8+,9-
InChIKeyLHHGDZSESBACKH-RCJZDJILSA-N
SMILES
SoftwareSMILES
CACTVS 3.385ClC1(Cl)C2(Cl)[C@]3(Cl)C4(Cl)C(=O)C5(Cl)[C@]3(Cl)C1(Cl)[C@@]5(Cl)[C@@]24Cl
OpenEye OEToolkits 1.7.6C1(=O)C2(C3(C4(C1(C5(C2(C3(C(C45Cl)(Cl)Cl)Cl)Cl)Cl)Cl)Cl)Cl)Cl
OpenEye OEToolkits 1.7.6C1(=O)C2([C@@]3([C@@]4(C1([C@@]5([C@]2(C3(C(C54Cl)(Cl)Cl)Cl)Cl)Cl)Cl)Cl)Cl)Cl
CACTVS 3.385ClC1(Cl)C2(Cl)[C]3(Cl)C4(Cl)C(=O)C5(Cl)[C]3(Cl)C1(Cl)[C]5(Cl)[C]24Cl
ACDLabs 12.01O=C2C1(Cl)C3(Cl)C5(Cl)C1(Cl)C4(Cl)C2(Cl)C3(Cl)C4(Cl)C5(Cl)Cl
FormulaC10 Cl10 O
Namechlordecone;
(1R,3aR,5bS,6S)-1,1a,3,3a,4,5,5,5a,5b,6-decachlorooctahydro-2H-1,3,4-(methanetriyl)cyclobuta[cd]pentalen-2-one
ChEMBL
DrugBank
ZINC
PDB chain4mg5 Chain A Residue 602 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4mg5 Structural and functional profiling of environmental ligands for estrogen receptors.
Resolution2.05 Å
Binding residue
(original residue number in PDB)
M343 L346 L384 M388 F404 M421 G521
Binding residue
(residue number reindexed from 1)
M39 L42 L80 M84 F100 M117 G215
Annotation score1
Binding affinityPDBbind-CN: -logKd/Ki=5.34,Kd=4.53uM
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:4mg5, PDBe:4mg5, PDBj:4mg5
PDBsum4mg5
PubMed25260197
UniProtP03372|ESR1_HUMAN Estrogen receptor (Gene Name=ESR1)

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